Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq74389 120 3e-22
seq63810 113 4e-20
seq2401 113 4e-20
seq104951 105 6e-18
seq157463 98.7 8e-16
seq33159 96.9 3e-15
seq48881 93.3 4e-14
seq5492 87.8 2e-12
>seq74389
Length=16610
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271
|||| ||||||| || ||||| || || || || || || || |||| ||||| | ||
Sbjct 10260 TGTAGAGATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACACTTGAGATCGA 10319
Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331
||| || || | || || ||||| ||||| ||| |||||||||| || |||||
Sbjct 10320 GCCCAGTGACACTATCGAGAATGTCAAAGCTAAAATCCAACACAAGGAGGGCATCCCACC 10379
Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391
|| || | | ||| || ||||||||||||||| | |||||| |||||| |||| ||
Sbjct 10380 TGACCAGGAGCATCTGATTTTTGCCGGCAAACAGATGGAGGATGGCCGCACTCTCTCAGA 10439
Query 22392 TTACAACATTCAAAAAGAATCCAC 22415
|| || || || ||||| |||||
Sbjct 10440 CTATAATATCCAGAAAGAGTCCAC 10463
>seq63810
Length=35167
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || |||||||| || |||| || || ||||| |||
Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| || || |||||||| ||||| || || || || ||
Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27794
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||||||||||||| | || ||| ||||| | ||||| ||||||
Sbjct 27793 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27734
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || ||||| |||||
Sbjct 27733 ATCCAGAAAGAGTCCAC 27717
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || || |||||||| || |||| || || ||||| |||
Sbjct 28141 ATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 28082
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| || || |||||||| ||||| || || || || ||
Sbjct 28081 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 28022
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||||||||||||| | || ||| ||||| | ||||| ||||||
Sbjct 28021 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27962
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 27961 ATCCAGAAGGAGTCCAC 27945
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || |||||||| || |||| || || ||||| |||
Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| || || |||||||| ||||| || || || || ||
Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27566
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||||||||||||| | || ||| ||||| | ||||| ||||||
Sbjct 27565 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27506
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 27505 ATCCAGAAGGAGTCCAC 27489
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | |||||| | | |||| || || ||||| |||
Sbjct 27457 ATGCAGATCTTCGTGAAGACCTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAGT 27398
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| || || |||||||| ||||| | || || || ||
Sbjct 27397 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCAGCCCCCCTGACCAG 27338
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| ||||| | ||||| ||||||
Sbjct 27337 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27278
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||||| | ||| | || |||| ||| | ||||||
Sbjct 27277 ATCCAGAAGGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGGT 27230
>seq2401
Length=18371
Score = 113 bits (124), Expect = 4e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273
|| ||||||| || | ||| || || |||| || || || |||| ||||| || |
Sbjct 140 TAGAGATGCAGATCTGTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGGGC 199
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
||| || || | || || ||||| ||| | ||| ||||||||||||| ||||| |
Sbjct 200 CCAATGACACTATTGAGAATGTCAAAGCTAAACTCCAAAACAAGGAGGGTATCCCACCTG 259
Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393
| || || ||||| || ||||| ||||||||| | |||||| |||||| |||| || |
Sbjct 260 ACCAGCAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACT 319
Query 22394 ACAACATTCAAAAAGAATCCAC 22415
| || || || |||| |||||
Sbjct 320 ATAATATCCAGAAAGCGTCCAC 341
>seq104951
Length=12537
Score = 105 bits (116), Expect = 6e-18
Identities = 146/203 (72%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAG-TGGAA 22272
|| ||||||| || |||| ||||| | || || || || |||| || ||| | ||
Sbjct 11248 TAGAGATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAG 11189
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| || || | || | ||||| ||||| |||||||||||||| || |||||
Sbjct 11188 CCCAGTGACACTATTGAAAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCT 11129
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || ||||| || |||| ||||||||| | |||||| |||||| |||| ||
Sbjct 11128 GACCAGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAC 11069
Query 22393 TACAACATTCAAAAAGAATCCAC 22415
|| ||||| | ||||| |||||
Sbjct 11068 TATAACATCGAGAAAGAGTCCAC 11046
>seq157463
Length=7943
Score = 98.7 bits (108), Expect = 8e-16
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| |||| || |||| | || || || || |||||||||| || ||| ||
Sbjct 563 AAGATGCAGCTTTTCGTGAAAATCCTTACTGGGAAGACCATCACTCTTGAGGTTGAACCC 504
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| | ||| | || |||| || || | || || ||||| || ||||| || | |
Sbjct 503 TCGGGTACAATAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGCT 444
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| ||| | | || ||||| ||||| ||| | || ||| || || | || || |||
Sbjct 443 CAGCAAAGACCGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTAC 384
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449
|||||||||||||| ||||| | ||| | || ||| || | || || ||| ||
Sbjct 383 AACATTCAAAAAGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGTT 330
>seq33159
Length=15523
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| |||||||| ||||| | || || || || |||| || || || ||| ||
Sbjct 2321 AAGATGCAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 2262
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | || || || || || ||||| | ||||| || |||
Sbjct 2261 TCAGATACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGAT 2202
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
| || | || || ||||| ||||| || | || ||| |||| || || || |||
Sbjct 2201 CTGTAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAC 2142
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||| || ||||| | ||| | || ||| || | || || |||
Sbjct 2141 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 2091
>seq48881
Length=14873
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| || ||||||||||| || || || | || || || || |||| || || |||||
Sbjct 7619 GTCAAAATGCAAATTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAG 7560
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| ||| ||| | || || | || || || || || |||||||| || || ||
Sbjct 7559 CCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCT 7500
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || | || || ||||| ||||| ||| | || ||| |||||| | || ||
Sbjct 7499 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 7440
Query 22393 TACAACATTCAAAAAGAATCCACC 22416
|||||||| || ||||| || |||
Sbjct 7439 TACAACATCCAGAAAGAGTCGACC 7416
>seq5492
Length=9153
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || ||||| | || || || || |||| || || || ||| ||
Sbjct 3599 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3658
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
||||| || || | || || || || || ||||| || ||||| || |||
Sbjct 3659 TTGGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3718
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| ||| | || || ||||| ||||| || || ||| |||| | || || |||
Sbjct 3719 CAGCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGACTAC 3778
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||| || ||||| | ||| | || ||| || | || || |||
Sbjct 3779 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 3829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418906972682500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |