Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq74389 120 3e-22 seq63810 113 4e-20 seq2401 113 4e-20 seq104951 105 6e-18 seq157463 98.7 8e-16 seq33159 96.9 3e-15 seq48881 93.3 4e-14 seq5492 87.8 2e-12 >seq74389 Length=16610 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| ||||||| || ||||| || || || || || || || |||| ||||| | || Sbjct 10260 TGTAGAGATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACACTTGAGATCGA 10319 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| || || | || || ||||| ||||| ||| |||||||||| || ||||| Sbjct 10320 GCCCAGTGACACTATCGAGAATGTCAAAGCTAAAATCCAACACAAGGAGGGCATCCCACC 10379 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || | | ||| || ||||||||||||||| | |||||| |||||| |||| || Sbjct 10380 TGACCAGGAGCATCTGATTTTTGCCGGCAAACAGATGGAGGATGGCCGCACTCTCTCAGA 10439 Query 22392 TTACAACATTCAAAAAGAATCCAC 22415 || || || || ||||| ||||| Sbjct 10440 CTATAATATCCAGAAAGAGTCCAC 10463 >seq63810 Length=35167 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||| ||||| || || || || || Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27794 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||||||| | || ||| ||||| | ||||| |||||| Sbjct 27793 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27734 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| ||||| Sbjct 27733 ATCCAGAAAGAGTCCAC 27717 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || |||||||| || |||| || || ||||| ||| Sbjct 28141 ATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 28082 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||| ||||| || || || || || Sbjct 28081 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 28022 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||||||| | || ||| ||||| | ||||| |||||| Sbjct 28021 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27962 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 27961 ATCCAGAAGGAGTCCAC 27945 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||| ||||| || || || || || Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27566 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||||||| | || ||| ||||| | ||||| |||||| Sbjct 27565 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27506 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 27505 ATCCAGAAGGAGTCCAC 27489 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||| | | |||| || || ||||| ||| Sbjct 27457 ATGCAGATCTTCGTGAAGACCTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAGT 27398 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||| ||||| | || || || || Sbjct 27397 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCAGCCCCCCTGACCAG 27338 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| ||||| | ||||| |||||| Sbjct 27337 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27278 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | ||| | || |||| ||| | |||||| Sbjct 27277 ATCCAGAAGGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGGT 27230 >seq2401 Length=18371 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || | ||| || || |||| || || || |||| ||||| || | Sbjct 140 TAGAGATGCAGATCTGTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGGGC 199 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 ||| || || | || || ||||| ||| | ||| ||||||||||||| ||||| | Sbjct 200 CCAATGACACTATTGAGAATGTCAAAGCTAAACTCCAAAACAAGGAGGGTATCCCACCTG 259 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || ||||| || ||||| ||||||||| | |||||| |||||| |||| || | Sbjct 260 ACCAGCAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACT 319 Query 22394 ACAACATTCAAAAAGAATCCAC 22415 | || || || |||| ||||| Sbjct 320 ATAATATCCAGAAAGCGTCCAC 341 >seq104951 Length=12537 Score = 105 bits (116), Expect = 6e-18 Identities = 146/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAG-TGGAA 22272 || ||||||| || |||| ||||| | || || || || |||| || ||| | || Sbjct 11248 TAGAGATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAG 11189 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || || | || | ||||| ||||| |||||||||||||| || ||||| Sbjct 11188 CCCAGTGACACTATTGAAAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCT 11129 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || ||||| || |||| ||||||||| | |||||| |||||| |||| || Sbjct 11128 GACCAGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAC 11069 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 || ||||| | ||||| ||||| Sbjct 11068 TATAACATCGAGAAAGAGTCCAC 11046 >seq157463 Length=7943 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||| || |||| | || || || || |||||||||| || ||| || Sbjct 563 AAGATGCAGCTTTTCGTGAAAATCCTTACTGGGAAGACCATCACTCTTGAGGTTGAACCC 504 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | | ||| | || |||| || || | || || ||||| || ||||| || | | Sbjct 503 TCGGGTACAATAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGCT 444 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | | || ||||| ||||| ||| | || ||| || || | || || ||| Sbjct 443 CAGCAAAGACCGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTAC 384 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 |||||||||||||| ||||| | ||| | || ||| || | || || ||| || Sbjct 383 AACATTCAAAAAGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGTT 330 >seq33159 Length=15523 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| ||||| | || || || || |||| || || || ||| || Sbjct 2321 AAGATGCAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 2262 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || ||||| | ||||| || ||| Sbjct 2261 TCAGATACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGAT 2202 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | || | || || ||||| ||||| || | || ||| |||| || || || ||| Sbjct 2201 CTGTAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAC 2142 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||||| | ||| | || ||| || | || || ||| Sbjct 2141 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 2091 >seq48881 Length=14873 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||||||||| || || || | || || || || |||| || || ||||| Sbjct 7619 GTCAAAATGCAAATTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAG 7560 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || || | || || || || || |||||||| || || || Sbjct 7559 CCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCT 7500 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || || Sbjct 7499 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 7440 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 7439 TACAACATCCAGAAAGAGTCGACC 7416 >seq5492 Length=9153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || || |||| || || || ||| || Sbjct 3599 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3658 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||| || || | || || || || || ||||| || ||||| || ||| Sbjct 3659 TTGGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3718 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| || || ||| |||| | || || ||| Sbjct 3719 CAGCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGACTAC 3778 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||||| | ||| | || ||| || | || || ||| Sbjct 3779 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 3829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418906972682500