Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq18433 95.1 2e-14 seq151129 89.7 1e-12 seq90525 89.7 1e-12 seq47983 89.7 1e-12 seq22588 89.7 1e-12 >seq18433 Length=13941 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 10023 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 9964 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 9963 TCCCGGCAGAGA 9952 >seq151129 Length=4240 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 933 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 874 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 873 CCCACGTTGGGC 862 >seq90525 Length=15459 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4966 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4907 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4906 CCCACGTTGGGC 4895 >seq47983 Length=57568 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 54682 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 54741 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 54742 CCCACGTTGGGC 54753 >seq22588 Length=21873 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 20593 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20534 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 20533 CCCACGTTGGGC 20522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025723149980500