Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq63810 156 8e-33 seq74389 129 1e-24 seq104951 118 2e-21 seq89363 113 8e-20 seq113583 109 1e-18 seq157463 107 4e-18 seq102059 104 4e-17 seq93939 102 1e-16 seq109872 100 5e-16 seq32206 98.7 2e-15 seq123873 89.7 9e-13 seq111920 84.2 4e-11 >seq63810 Length=35167 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || ||||| || || | |||||||| Sbjct 27705 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27764 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || ||||| || || | | || ||||| || || ||||| || |||||||| Sbjct 27765 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 27824 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| |||||||||||| | || || |||| ||||||||| || Sbjct 27825 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 27884 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| ||||| |||||||| Sbjct 27885 CCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || ||||| || || | |||||||| Sbjct 27477 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27536 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || ||||| || || | | || ||||| || || ||||| || |||||||| Sbjct 27537 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 27596 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| |||||||||||| | || || |||| ||||||||| || Sbjct 27597 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 27656 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| ||||| |||||||| Sbjct 27657 CCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || ||||| || || | |||||||| Sbjct 27933 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27992 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || ||||| || || | | || ||||| || || ||||| || |||||||| Sbjct 27993 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 28052 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| |||||||||||| | || || |||| ||||||||| || Sbjct 28053 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 28112 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||| || || ||||||||| Sbjct 28113 CCGGTCAAGGTCTTCACAAAGATCTGCATT 28142 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||| || || |||||||| || |||||||| || ||||| Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || ||||| || || | || || ||||| || || Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||| || |||||||| ||||| |||||||| |||||||||||| | || || Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27410 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| | || || |||||| ||||| |||||||| Sbjct 27411 TCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457 >seq74389 Length=16610 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| ||||| || ||||| || | ||||| || Sbjct 10475 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 10416 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || ||||| || || || | ||||| ||||| ||||| ||||||| ||| Sbjct 10415 ATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTGG 10356 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| |||||| ||||| | || | || | |||||||| || Sbjct 10355 ATTTTAGCTTTGACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTTG 10296 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| | |||||| || || |||||||| Sbjct 10295 CCCGTCAAGGTCTTCACAAAGATCTGCAT 10267 >seq104951 Length=12537 Score = 118 bits (130), Expect = 2e-21 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| | ||||||||| || ||||| || | ||||| || Sbjct 11034 ACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCC 11093 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || | || || || | || ||||| ||||| ||||| ||||||||||| Sbjct 11094 AGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 11153 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA-CTTCCAAGGTGATGGTTTT 68431 || || || |||||| || || ||||| | || | ||| | |||||||| || Sbjct 11154 ATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCTT 11213 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || | || |||||||| Sbjct 11214 GCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 >seq89363 Length=18264 Score = 113 bits (124), Expect = 8e-20 Identities = 151/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| |||||||| |||| || ||||| || Sbjct 15792 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAATCTAAGAGAGTGG--CCATCCTCC 15849 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || | || | |||| || ||||| | ||| ||||| ||||||||||| Sbjct 15850 AGCTGTTTGCCCTCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTGG 15909 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || |||||| ||| ||||||| | || || || | || ||||| || Sbjct 15910 ATTTTAGCGTTGACGTTCTCAGTGGTGTCACTGGGCTCGACCTCGA--GT-ATGGTCTTG 15966 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGC 68459 ||| | |||||||| || || |||||| Sbjct 15967 CCCATCAGGGTCTTCACAAAGATCTGC 15993 >seq113583 Length=22641 Score = 109 bits (120), Expect = 1e-18 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| | ||||||||||| ||||| ||||| || ||||||| || ||||| || Sbjct 17442 ACCAAGTGCACGGTGGACTCTTTCTGGATATTATAGTCTGAGAGTG--CTGCCATCCTCC 17499 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || | || || | || || || || || ||||| |||| |||||| Sbjct 17500 AGCTGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTGG 17559 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || | || ||||| ||| | ||||| | || || || | |||||||| || Sbjct 17560 ATTTGAGCTTTGACATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTTG 17619 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || |||||||| Sbjct 17620 CCCGTCAGGGTCTTCAC-AAGATCTGCAT 17647 >seq157463 Length=7943 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || |||||||||||||| ||||| || || || Sbjct 334 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGAC 393 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || || || || ||||||| || | || ||| Sbjct 394 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGA 453 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || |||| ||||| | || || || | | | ||| || Sbjct 454 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACC 513 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || ||| | || ||||| | |||||| Sbjct 514 TCAAGAGTGATGGTCTTCCCAGTAAGGATTTTCACGAAAAGCTGCAT 560 >seq102059 Length=16704 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68257 AGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACT 68316 |||| || ||||||| || ||| |||| || ||||| || || | |||||||| | || Sbjct 6009 AGTGCAGAGTGGACTTCTTCTGGGTGTTGTAGTCGGACAGAGTGCATCCATCTTCCAGCT 6068 Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 | ||||| || || || || || ||||| || || ||||| || |||||||| |||| Sbjct 6069 GTTTCCCAGCAAAGATCTACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCT 6128 Query 68377 TTGCCTTGACGGCCTCGATGGTGTC 68401 | |||||||| |||||||||||| Sbjct 6129 TGGCCTTGACATTCTCGATGGTGTC 6153 >seq93939 Length=21031 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || |||||| |||| ||| | ||| | || || | || | ||||| || Sbjct 20757 ACCAAGTGCAGGGTGGACCCTTTCTGGCTATTAGAGTCTAAGCGAGTGCGGCCATCCTCC 20698 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || | || || | ||| ||||| ||||| ||||||||||| Sbjct 20697 AGCTGTTTGCCTGCAAAAACCAGATGCTGCTAGTCAGGTGGGATGCCCTCCTTGTCTTGG 20638 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||| ||| |||||||| | || || |||| || |||||| || Sbjct 20637 ATTAGAGCTTTGACATTCTCCATGGTGTCACTGGGCTCGACCTCCAGGGGGATGGTCTTG 20578 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| | || |||||||| Sbjct 20577 CCCGTCAGGGTCTTCCCAAAGATCTGCAT 20549 >seq109872 Length=19372 Score = 100 bits (110), Expect = 5e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68254 CCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| | || |||||||||||||| || ||||| || ||||| | | ||||| || | Sbjct 16140 CCAACCGGAGAGTGGACTCTTTTTGCATATTATAGTCTGAGAGAATGCGACCATCCTCCA 16199 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| || || || || | || | ||| ||||| ||||| ||||||||| ||||||| | Sbjct 16200 GCTGTTTGCCCGCAAAAAACAGACATTGCTGGTCAGGTGGGATGCCTTCCGTGTCTTGGA 16259 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || || ||||| ||| | ||||| | || || || | | ||||| | | Sbjct 16260 TTTTAGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGCAATGGTCTAGC 16319 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||| || || |||||||| Sbjct 16320 CCTTCGGGGTCTTCACAAAGATCTGCAT 16347 >seq32206 Length=52285 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 10/209 (5%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || |||||||| || ||||||||| | || ||||| || | ||||| || Sbjct 18139 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTAGAGTCTGAGAGAGTGCAGCCATCCTCC 18080 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || | || || | ||||| ||||| ||||||||||| Sbjct 18079 AGCTGCTTGCCCGCAAAATTCAGA------TGCT--GGTGGGATGCCCTCCTTGTCTTGG 18028 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||| | ||||| | || || || | |||||||| || Sbjct 18027 ATTTTAGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCTTG 17968 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||| || || |||||||| Sbjct 17967 CCCGCGAGGGTC--CACAAAGATCTGCAT 17941 >seq123873 Length=8769 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/209 (70%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| ||||| || ||||| || ||||| || Sbjct 312 ACCAAGTGCAG-GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCC 254 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | || ||||| || || |||| |||||||||| Sbjct 253 AGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGC---CCTTGTCTTGG 197 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||| | ||||| | | || || | |||||| | || Sbjct 196 ATTTTAGCTTTGACATTCTCAGTAGTGTCACTGGGCTTGACCTCGAGTGTGATGTTCTTG 137 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | |||||||| || || |||||||| Sbjct 136 TCTATCAGGGTCTTCAC-AAGATCTGCAT 109 >seq111920 Length=52810 Score = 84.2 bits (92), Expect = 4e-11 Identities = 145/208 (70%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 68254 CCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 ||||||| || ||||||||||| ||| |||| | || ||||| || ||||| ||| Sbjct 40507 CCAAGTGCAGGGTGGACTCTTTCTGGCTGTTCTTGTCTGAGAGAGTTTAGCCATCCTCT- 40449 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| || | || ||||| | || ||||| || || ||| | | ||||||||| | Sbjct 40448 GCTGTTTATCTGCAAATATCGGATGCTGCTGGTCAGGCGGGATGACCTTCTTGTCTTGGA 40389 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || || ||||| | ||||||||| ||| || || | |||||||| | | Sbjct 40388 TTTTGGCTTTGACATTCCTGATGGTGTC-ACTG-----ACCTCGAGGGTGATGGCGCTGC 40335 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||| ||| || || ||||| || Sbjct 40334 CCGTCAGGGGCTTCACAAAGATCTGTAT 40307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919773395060000