Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq33159 96.9 3e-15
seq5492 91.5 1e-13
seq12448 89.7 4e-13
seq157463 84.2 2e-11
>seq33159
Length=15523
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | ||| | || || || |||||||||||||| ||
Sbjct 2091 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2150
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| | |||||| ||||| || ||||| |||| || | | | || |||||
Sbjct 2151 CACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGG 2210
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| |||| || || ||||| |||| | ||| | || || | || ||| ||
Sbjct 2211 AATTTCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAC 2270
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | || || || || || ||||| ||||||||||||||
Sbjct 2271 CTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 2318
>seq5492
Length=9153
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | ||| | || || || |||||||||||||| ||
Sbjct 3829 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 3770
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| | |||||| |||| || ||||| |||| || | || || || |||||
Sbjct 3769 CAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 3710
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || ||||| |||| | ||| || || || ||| ||
Sbjct 3709 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAAC 3650
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | || || || || || ||||| || |||||||||||
Sbjct 3649 CTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602
>seq12448
Length=17785
Score = 89.7 bits (98), Expect = 4e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218
|||| |||||||| || | ||| | || || || | ||||||||| || || || |
Sbjct 3319 CCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACA 3378
Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278
|| | |||||| ||||| || || || |||| || | || || | ||||||||
Sbjct 3379 GTGCATCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATT 3438
Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338
|||||||| || ||||| ||||| | ||| | || || | || ||| || ||
Sbjct 3439 CCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCG 3498
Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| ||| | || || || || || ||||| || |||||||||||
Sbjct 3499 AGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3542
>seq157463
Length=7943
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211
|| ||| ||||| |||||||| || | ||| | || || ||||||||||||||||| ||
Sbjct 330 AACACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTC 389
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
|| |||||| |||||| || || || ||||| |||| | | || || | ||
Sbjct 390 TGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGG 449
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
|||||| ||||| || || |||| |||| | ||| | || | | || |||
Sbjct 450 AGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTC 509
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || || || |||| || |||| ||||||
Sbjct 510 AACCTCAAGAGTGATGGTCTTCCCAGTAAGGATTTTCACGAAAAGCTGCAT 560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419312577726000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |