Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq33159 96.9 3e-15 seq5492 91.5 1e-13 seq12448 89.7 4e-13 seq157463 84.2 2e-11 >seq33159 Length=15523 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 2091 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2150 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| | |||||| ||||| || ||||| |||| || | | | || ||||| Sbjct 2151 CACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGG 2210 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 2211 AATTTCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAC 2270 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| |||||||||||||| Sbjct 2271 CTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 2318 >seq5492 Length=9153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 3829 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 3770 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| | |||||| |||| || ||||| |||| || | || || || ||||| Sbjct 3769 CAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 3710 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| || || || ||| || Sbjct 3709 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAAC 3650 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 3649 CTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602 >seq12448 Length=17785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 |||| |||||||| || | ||| | || || || | ||||||||| || || || | Sbjct 3319 CCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACA 3378 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 || | |||||| ||||| || || || |||| || | || || | |||||||| Sbjct 3379 GTGCATCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATT 3438 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 |||||||| || ||||| ||||| | ||| | || || | || ||| || || Sbjct 3439 CCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCG 3498 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| | || || || || || ||||| || ||||||||||| Sbjct 3499 AGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3542 >seq157463 Length=7943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || ||| ||||| |||||||| || | ||| | || || ||||||||||||||||| || Sbjct 330 AACACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTC 389 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || |||||| |||||| || || || ||||| |||| | | || || | || Sbjct 390 TGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGG 449 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||| ||||| || || |||| |||| | ||| | || | | || ||| Sbjct 450 AGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTC 509 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || || |||| || |||| |||||| Sbjct 510 AACCTCAAGAGTGATGGTCTTCCCAGTAAGGATTTTCACGAAAAGCTGCAT 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419312577726000