Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq12448 138 3e-27
seq5492 122 2e-22
seq104951 118 2e-21
seq48881 118 2e-21
seq74389 111 4e-19
seq2401 109 1e-18
seq90327 98.7 2e-15
seq123873 96.9 8e-15
seq113583 95.1 3e-14
seq66463 91.5 3e-13
seq109872 87.8 4e-12
seq4243 87.8 4e-12
>seq12448
Length=17785
Score = 138 bits (152), Expect = 3e-27
Identities = 166/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307
|||| | ||||| | || ||||||| ||| || | ||| || || ||||| | |
Sbjct 3317 CACCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACA 3376
Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGA 288367
|||| ||| ||||| | ||| || ||||| |||||||| | || ||| | || |
Sbjct 3377 CAGTGCATCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAA 3436
Query 288368 TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTT 288427
||||||||||||||||||| || ||||| || |||||||| | ||| | ||| || |
Sbjct 3437 TTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCT 3496
Query 288428 CGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||| ||||| |||||||| || || || || ||||| ||||||||
Sbjct 3497 CGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3542
>seq5492
Length=9153
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 3828 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 3769
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| |||| || ||||| ||| || || || |||||||| | || ||| | ||
Sbjct 3768 AAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3709
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||| | | ||| | ||| ||
Sbjct 3708 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACC 3649
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| |||||||| || || || || ||||| ||||||||
Sbjct 3648 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602
>seq104951
Length=12537
Score = 118 bits (130), Expect = 2e-21
Identities = 142/192 (74%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| | ||| |||||||| | ||| ||||| || || || | ||||| || | ||
Sbjct 11052 TCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCACAAAA 11111
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || | |||||| || || || || |||||||| ||||| ||||||
Sbjct 11112 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTT 11171
Query 288403 TCTATAGAATCGCTCGATTCTA-CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| || || | || | ||| ||| ||||| ||||| || ||||| || || |
Sbjct 11172 TCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCTTGCCTGTCAGGGTTTTCCC 11231
Query 288462 GAATATCTGCAT 288473
|| ||||||||
Sbjct 11232 AAAGATCTGCAT 11243
>seq48881
Length=14873
Score = 118 bits (130), Expect = 2e-21
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 7423 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7482
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | ||||| || || ||||||||||| || || ||||| ||
Sbjct 7483 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTC 7542
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||||| | || || || || ||||| ||||| || ||||| ||||| |||
Sbjct 7543 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 7602
Query 288463 AATATCTGCATTATG 288477
|| || |||||| ||
Sbjct 7603 AAAATTTGCATTTTG 7617
>seq74389
Length=16610
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| |||||||||||||| | ||| ||||| || || || | ||||| || || ||
Sbjct 10457 TCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCATCTGTTTGCCGGCAAAA 10398
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||||| ||| || | |||||| || || || | |||||||| ||||| || ||
Sbjct 10397 ATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTGGATTTTAGCTTTGACATTC 10338
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| || || | || | || || ||||| ||||| || |||| ||||| ||
Sbjct 10337 TCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTTGCCCGTCAAGGTCTTCACA 10278
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 10277 AAGATCTGCAT 10267
>seq2401
Length=18371
Score = 109 bits (120), Expect = 1e-18
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||| |||||||||||||| | ||| ||||| || || || | ||||| ||||| || |
Sbjct 334 CTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAAA 275
Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403
|||||||||| || | |||||| || || || | |||| ||| ||||| || || |
Sbjct 274 TCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTGGAGTTTAGCTTTGACATTCT 215
Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
| |||| || | | | || || || ||||| ||||| || || || ||||| ||
Sbjct 214 CAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACAC 155
Query 288464 ATATCTGCAT 288473
| ||||||||
Sbjct 154 AGATCTGCAT 145
>seq90327
Length=63722
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||| | | | ||||||| ||| || |||| || || ||||| |
Sbjct 54711 CCACCACGAAGTGTCAAAATCAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGAC 54652
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || | ||| ||||| | ||| || || || ||| |||| | || ||| | ||
Sbjct 54651 AAGGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGA 54592
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || ||||| || |||||| | | ||| | ||| ||
Sbjct 54591 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACC 54532
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||||||||| | || | | ||| ||||||||
Sbjct 54531 TCAAGAGTGATGGTCTTCCCGGTATGGGTTTCCATGAAAATCTGCAT 54485
>seq123873
Length=8769
Score = 96.9 bits (106), Expect = 8e-15
Identities = 137/191 (72%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| |||||||||||||| | ||| ||| | || || || | ||||| ||||| ||
Sbjct 295 TCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAAA 236
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || | ||||| | | || || |||||||| ||||| || ||
Sbjct 235 ATCAGACGCTGCTGGTCAGGCGGGATGC---CCTTGTCTTGGATTTTAGCTTTGACATTC 179
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| ||| || || | | || ||||| ||||| |||| | |||| ||||| ||
Sbjct 178 TCAGTAGTGTCACTGGGCTTGACCTCGAGTGTGATGTTCTTGTCTATCAGGGTCTTCAC- 120
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 119 AAGATCTGCAT 109
>seq113583
Length=22641
Score = 95.1 bits (104), Expect = 3e-14
Identities = 137/191 (72%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| |||||||||||||| | ||| ||| || || || | ||||| || || |
Sbjct 17460 TCTTTCTGGATATTATAGTCTGAGAG--TGCTGCCATCCTCCAGCTGTTTGCCCGCACAA 17517
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || | ||||| || || | || ||||||| ||||| || |
Sbjct 17518 ATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTGGATTTGAGCTTTGACATGC 17577
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| ||| || || | || || ||||| ||||| ||||| || ||||| ||||| ||
Sbjct 17578 TCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCCGTCAGGGTCTTCAC- 17636
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 17637 AAGATCTGCAT 17647
>seq66463
Length=18175
Score = 91.5 bits (100), Expect = 3e-13
Identities = 120/165 (73%), Gaps = 1/165 (1%)
Strand=Plus/Minus
Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369
|| ||||| |||| | ||| || || || ||| |||| | || |||| | || |||
Sbjct 9791 GTACGTCCACCTTCCAGTTGCTTGCCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGAATT 9732
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
|||||||||||| |||| || || || || |||||||| | ||| | ||| | ||
Sbjct 9731 CCTTCTTTATCCCGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAGCCTCC 9672
Query 288430 AGCGTGATCG-TCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| | ||||||| || || || || ||||| ||||||||
Sbjct 9671 AGAGTGATGGTTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 9627
>seq109872
Length=19372
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|||||||| ||||||||||| | ||| |||| || || || | ||||| || || ||
Sbjct 16157 TCTTTTTGCATATTATAGTCTGAGAGAATGCGACCATCCTCCAGCTGTTTGCCCGCAAAA 16216
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
| ||||| || || | |||||| ||||| | || |||||||| ||||| || ||
Sbjct 16217 AACAGACATTGCTGGTCAGGTGGGATGCCTTCCGTGTCTTGGATTTTAGCTTTGACATTC 16276
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| ||| || || | || || || || | || |||| || || | ||||| ||
Sbjct 16277 TCAGTAGTGTCACTGGGCTCGACCTCAAGTGCAATGGTCTAGCCCTTCGGGGTCTTCACA 16336
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 16337 AAGATCTGCAT 16347
>seq4243
Length=11451
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| | ||||||||| || | ||| |||| || || || | ||||| || | ||
Sbjct 6756 TCTTTCTAGATATTATAATCTGTGAGAGTGCAACCATCCTCCAGCTGTTTGCCCACAAAA 6697
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||| ||| || | ||||| || | || ||||||||||| ||||| | ||
Sbjct 6696 ATCAGACACTGCTGGTCAGACGGGATGCCCTACTTGTCCTGGATTTTAGCTTTGCCATTC 6637
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| | || || || | || || | || ||||| ||||| |||||||||||| ||
Sbjct 6636 TCAACAGTGTCACTGGGCTCCACCTTTAGTGTGATGGTCTTAGTGGTCAGAGTCTTCACA 6577
Query 288463 AATATCTG 288470
|| |||||
Sbjct 6576 AAGATCTG 6569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177228551319000
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