Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq12448 138 3e-27 seq5492 122 2e-22 seq104951 118 2e-21 seq48881 118 2e-21 seq74389 111 4e-19 seq2401 109 1e-18 seq90327 98.7 2e-15 seq123873 96.9 8e-15 seq113583 95.1 3e-14 seq66463 91.5 3e-13 seq109872 87.8 4e-12 seq4243 87.8 4e-12 >seq12448 Length=17785 Score = 138 bits (152), Expect = 3e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| | ||||| | || ||||||| ||| || | ||| || || ||||| | | Sbjct 3317 CACCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACA 3376 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGA 288367 |||| ||| ||||| | ||| || ||||| |||||||| | || ||| | || | Sbjct 3377 CAGTGCATCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAA 3436 Query 288368 TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTT 288427 ||||||||||||||||||| || ||||| || |||||||| | ||| | ||| || | Sbjct 3437 TTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCT 3496 Query 288428 CGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 3497 CGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3542 >seq5492 Length=9153 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 3828 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 3769 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||| || ||||| ||| || || || |||||||| | || ||| | || Sbjct 3768 AAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3709 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||| | | ||| | ||| || Sbjct 3708 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACC 3649 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 3648 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602 >seq104951 Length=12537 Score = 118 bits (130), Expect = 2e-21 Identities = 142/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| | ||| |||||||| | ||| ||||| || || || | ||||| || | || Sbjct 11052 TCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCACAAAA 11111 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||| || || || || |||||||| ||||| |||||| Sbjct 11112 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTT 11171 Query 288403 TCTATAGAATCGCTCGATTCTA-CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || || | || | ||| ||| ||||| ||||| || ||||| || || | Sbjct 11172 TCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCTTGCCTGTCAGGGTTTTCCC 11231 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 11232 AAAGATCTGCAT 11243 >seq48881 Length=14873 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 7423 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7482 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| || || ||||||||||| || || ||||| || Sbjct 7483 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTC 7542 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| || ||||| ||||| ||| Sbjct 7543 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 7602 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 7603 AAAATTTGCATTTTG 7617 >seq74389 Length=16610 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | ||| ||||| || || || | ||||| || || || Sbjct 10457 TCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCATCTGTTTGCCGGCAAAA 10398 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||| ||| || | |||||| || || || | |||||||| ||||| || || Sbjct 10397 ATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTGGATTTTAGCTTTGACATTC 10338 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || | || | || || ||||| ||||| || |||| ||||| || Sbjct 10337 TCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTTGCCCGTCAAGGTCTTCACA 10278 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 10277 AAGATCTGCAT 10267 >seq2401 Length=18371 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| |||||||||||||| | ||| ||||| || || || | ||||| ||||| || | Sbjct 334 CTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAAA 275 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 |||||||||| || | |||||| || || || | |||| ||| ||||| || || | Sbjct 274 TCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTGGAGTTTAGCTTTGACATTCT 215 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| || | | | || || || ||||| ||||| || || || ||||| || Sbjct 214 CAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACAC 155 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 154 AGATCTGCAT 145 >seq90327 Length=63722 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||| | | | ||||||| ||| || |||| || || ||||| | Sbjct 54711 CCACCACGAAGTGTCAAAATCAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGAC 54652 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | ||| || || || ||| |||| | || ||| | || Sbjct 54651 AAGGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGA 54592 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| || |||||| | | ||| | ||| || Sbjct 54591 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACC 54532 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||||||||| | || | | ||| |||||||| Sbjct 54531 TCAAGAGTGATGGTCTTCCCGGTATGGGTTTCCATGAAAATCTGCAT 54485 >seq123873 Length=8769 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | ||| ||| | || || || | ||||| ||||| || Sbjct 295 TCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAAA 236 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | ||||| | | || || |||||||| ||||| || || Sbjct 235 ATCAGACGCTGCTGGTCAGGCGGGATGC---CCTTGTCTTGGATTTTAGCTTTGACATTC 179 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || ||| || || | | || ||||| ||||| |||| | |||| ||||| || Sbjct 178 TCAGTAGTGTCACTGGGCTTGACCTCGAGTGTGATGTTCTTGTCTATCAGGGTCTTCAC- 120 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 119 AAGATCTGCAT 109 >seq113583 Length=22641 Score = 95.1 bits (104), Expect = 3e-14 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | ||| ||| || || || | ||||| || || | Sbjct 17460 TCTTTCTGGATATTATAGTCTGAGAG--TGCTGCCATCCTCCAGCTGTTTGCCCGCACAA 17517 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | ||||| || || | || ||||||| ||||| || | Sbjct 17518 ATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTGGATTTGAGCTTTGACATGC 17577 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || ||| || || | || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 17578 TCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCCGTCAGGGTCTTCAC- 17636 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 17637 AAGATCTGCAT 17647 >seq66463 Length=18175 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 || ||||| |||| | ||| || || || ||| |||| | || |||| | || ||| Sbjct 9791 GTACGTCCACCTTCCAGTTGCTTGCCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGAATT 9732 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||||||| |||| || || || || |||||||| | ||| | ||| | || Sbjct 9731 CCTTCTTTATCCCGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAGCCTCC 9672 Query 288430 AGCGTGATCG-TCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||||| || || || || ||||| |||||||| Sbjct 9671 AGAGTGATGGTTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 9627 >seq109872 Length=19372 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| ||||||||||| | ||| |||| || || || | ||||| || || || Sbjct 16157 TCTTTTTGCATATTATAGTCTGAGAGAATGCGACCATCCTCCAGCTGTTTGCCCGCAAAA 16216 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | ||||| || || | |||||| ||||| | || |||||||| ||||| || || Sbjct 16217 AACAGACATTGCTGGTCAGGTGGGATGCCTTCCGTGTCTTGGATTTTAGCTTTGACATTC 16276 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || ||| || || | || || || || | || |||| || || | ||||| || Sbjct 16277 TCAGTAGTGTCACTGGGCTCGACCTCAAGTGCAATGGTCTAGCCCTTCGGGGTCTTCACA 16336 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 16337 AAGATCTGCAT 16347 >seq4243 Length=11451 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| | ||||||||| || | ||| |||| || || || | ||||| || | || Sbjct 6756 TCTTTCTAGATATTATAATCTGTGAGAGTGCAACCATCCTCCAGCTGTTTGCCCACAAAA 6697 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||| ||| || | ||||| || | || ||||||||||| ||||| | || Sbjct 6696 ATCAGACACTGCTGGTCAGACGGGATGCCCTACTTGTCCTGGATTTTAGCTTTGCCATTC 6637 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | || || || | || || | || ||||| ||||| |||||||||||| || Sbjct 6636 TCAACAGTGTCACTGGGCTCCACCTTTAGTGTGATGGTCTTAGTGGTCAGAGTCTTCACA 6577 Query 288463 AATATCTG 288470 || ||||| Sbjct 6576 AAGATCTG 6569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177228551319000