Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq48881 114 1e-20 seq63810 96.9 4e-15 seq32806 95.1 1e-14 seq65056 91.5 2e-13 seq64078 91.5 2e-13 seq97442 89.7 6e-13 seq90416 89.7 6e-13 seq2401 87.8 2e-12 seq12135 86.0 7e-12 seq18747 84.2 2e-11 seq104951 82.4 8e-11 seq89363 82.4 8e-11 >seq48881 Length=14873 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||| |||| |||| || ||| || || || ||||| |||| Sbjct 7387 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 7446 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| || || || ||||| | ||||||||| | || Sbjct 7447 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 7506 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 7507 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 7566 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| |||||||| || ||||| || || ||||||||||| || Sbjct 7567 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTTGAC 7619 >seq63810 Length=35167 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | |||| |||| ||| |||||| || || ||||| || | | Sbjct 27915 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27974 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| || || || || || | ||||||||||| | || Sbjct 27975 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 28034 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||| ||||| ||| || |||| || | | ||||| || | ||||| Sbjct 28035 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 28094 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | |||||||| || || || | ||||| |||||||| |||||| || Sbjct 28095 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATTGTC 28145 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | |||| |||| ||| |||||| || || ||||| || | | Sbjct 27459 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27518 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| || || || || || | ||||||||||| | || Sbjct 27519 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27578 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||| ||||| ||| || |||| || | | ||||| || | ||||| Sbjct 27579 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27638 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || | ||||| || ||||| ||||| Sbjct 27639 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | |||| |||| ||| ||| || || || ||||| || | | Sbjct 27687 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 27746 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| || || || || || | ||||||||||| | || Sbjct 27747 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27806 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||| ||||| ||| || |||| || | | ||||| || | ||||| Sbjct 27807 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27866 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || | ||||| || ||||| ||||| Sbjct 27867 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 >seq32806 Length=18495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||| || || ||||| || || | ||||| || | || || Sbjct 13611 CACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTC 13552 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || | || || | | ||||||||||| | ||| | || |||||| || Sbjct 13551 CAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTG 13492 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||| ||||| || | | || || || | ||||| |||| |||||||| || Sbjct 13491 GGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCTT 13432 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| |||||||| ||||| Sbjct 13431 GCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402 >seq65056 Length=14552 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4304 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4245 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4244 ATACTAACGAGGA 4232 >seq64078 Length=34826 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26260 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26201 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 26200 TACTAACGAGGAT 26188 >seq97442 Length=63513 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30226 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30167 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 30166 TACTAACGAGGA 30155 >seq90416 Length=8837 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2300 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2359 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2360 TACTAACGAGGA 2371 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5790 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5849 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 5850 TACTAACGAGGA 5861 >seq2401 Length=18371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| ||| | | || || ||||| || || | ||||| || | Sbjct 360 ACGAAGCACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCC 301 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| || || || || || || ||||||||||| | ||| | | |||||| Sbjct 300 ATCCTCCAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTT 241 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || || ||| ||||| || | | ||||| | | | || || | ||||| Sbjct 240 GTTTTGGAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGAT 181 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| ||||| ||||| ||| |||| ||||| Sbjct 180 GGTCTTGCCTGTTAGGGTCTTCACACAGATCTGCAT 145 >seq12135 Length=8511 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||| ||| Sbjct 565 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCCCTA 624 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 625 TACTAACGAGGA 636 >seq18747 Length=37247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||| || || || || || || ||||||||||||| || | || ||||||||| Sbjct 35527 TAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 35586 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| | |||| ||||| | | | || |||| |||||||| || Sbjct 35587 GATTTTAGCTTTGA-CTTCGCAGTAGTGTCACGGGGCTTGACCTCGAGTGTGATGGTCTT 35645 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| || ||||| ||||| Sbjct 35646 GCCCGTCAGGGTCTTCAC-AAGATCTGCAT 35674 >seq104951 Length=12537 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| ||| ||| || | || || || || | ||||| || | Sbjct 11027 ACGAAGCACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCC 11086 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| || || | || || || ||||||||||| | ||| | || |||||| Sbjct 11087 ATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTT 11146 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA-CATCGACCGTGA 42171 ||| |||||| ||||| | | | ||||| || | || | | | || |||| Sbjct 11147 GTCTTGGATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGA 11206 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || || || ||||||| ||||| Sbjct 11207 TGGTCTTGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 >seq89363 Length=18264 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||| || || ||||| ||||| ||||| || | || || Sbjct 15791 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAATCTAAGAGAGTG-GC-CATCCTC 15848 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || | || | |||||||||||||| | ||| | || ||||||||| Sbjct 15849 CAGCTGTTTGCCCTCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTG 15908 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| |||| || | ||||| || | || || |||| || ||||| || Sbjct 15909 GATTTTAGCGTTGACGTTCTCAGTGGTGTCACTGGGCTCGACCTCGA--GT-ATGGTCTT 15965 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGC 42206 |||| | || ||||| |||||||| ||| Sbjct 15966 GCCCATCAGGGTCTTCACAAAGATCTGC 15993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542122979320000