Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq48881 127 2e-24 seq63810 122 9e-23 seq5492 114 1e-20 seq33159 111 2e-19 seq12448 107 2e-18 seq157463 105 7e-18 seq32806 96.9 3e-15 seq90327 89.7 5e-13 seq66463 86.0 6e-12 seq104951 84.2 2e-11 >seq48881 Length=14873 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 7417 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 7476 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || || || || || || || ||| Sbjct 7477 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 7536 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| || | || | ||||||||| |||| || Sbjct 7537 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 7596 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||||||||||||||| Sbjct 7597 TTCACGAAAATTTGCATTTT 7616 >seq63810 Length=35167 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||| | ||||| ||||| |||||| Sbjct 27717 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCG 27776 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | |||||||||||| || || || || ||||| ||||| || || ||| Sbjct 27777 GCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 27836 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||| |||||||| || Sbjct 27837 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 27896 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 27897 TTCACGAAGATCTGCAT 27913 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | ||||| ||||| |||||| Sbjct 27489 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCG 27548 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | |||||||||||| || || || || ||||| ||||| || || ||| Sbjct 27549 GCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 27608 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||| |||||||| || Sbjct 27609 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 27668 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 27669 TTCACGAAGATCTGCAT 27685 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | ||||| ||||| |||||| Sbjct 27945 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCG 28004 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | |||||||||||| || || || || ||||| ||||| || || ||| Sbjct 28005 GCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 28064 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||| |||||||| || Sbjct 28065 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 28124 Query 64427 TTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 28125 TTCACAAAGATCTGCATT 28142 >seq5492 Length=9153 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 3829 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 3770 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||| | | ||||| | |||||||| ||| | || || | ||||| || ||||| Sbjct 3769 CAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 3710 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || |||||| || || || Sbjct 3709 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAAC 3650 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| |||||||| ||||| || Sbjct 3649 CTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599 >seq33159 Length=15523 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 2091 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2150 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||| | ||||| || |||||||| ||| | || || | | | | || ||||| Sbjct 2151 CACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGG 2210 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||| |||| || || ||||| || ||||||| || | |||||| || || || Sbjct 2211 AATTTCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAC 2270 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| || ||||| ||||| || Sbjct 2271 CTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCATCTT 2321 >seq12448 Length=17785 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || | ||||||||| || || | || |||| | Sbjct 3327 TCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCATCC 3386 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| | ||||||||||||||||| Sbjct 3387 ATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTT 3446 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || |||||| || | |||||| || || || || | || | Sbjct 3447 ATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGAT 3506 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | ||||| |||||||| ||||| || Sbjct 3507 GGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3545 >seq157463 Length=7943 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || ||||||||||||||||| |||| Sbjct 333 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGA 392 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| ||||||||||| ||| | || | | ||||| | ||||| Sbjct 393 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGG 452 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || | || ||||| | || | |||| | || || || Sbjct 453 AATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAAC 512 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || || | |||| ||||||| ||||| || Sbjct 513 CTCAAGAGTGATGGTCTTCCCAGTAAGGATTTTCACGAAAAGCTGCATCTT 563 >seq32806 Length=18495 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || || || || |||| || ||||| | || || ||||| |||| |||| || Sbjct 13592 TCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTCCAGCTGTTTGCTGGCAAAA 13533 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAAC 64371 | | ||||||||||| || || || || || || ||||| |||| ||||| ||| Sbjct 13532 GTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTG-GGTTTTAGCTTTGACATT 13474 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 ||| | ||||||| || ||||| || | || | ||||||||| |||| || || || Sbjct 13473 CTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCTTGCCTGTCAGGGTCTTCAC 13414 Query 64432 GAAAATTTGCAT 64443 || || ||||| Sbjct 13413 AAAGATGTGCAT 13402 >seq90327 Length=63722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || || || |||| ||||||||| || | | ||| | | ||||| || Sbjct 54690 AGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAGT 54631 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| | | || | ||||| || |||||||||||||| || || || || Sbjct 54630 TGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 54571 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || |||||| || |||||| || || || || | ||| | |||||| ||| Sbjct 54570 TTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCG 54511 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || |||| | |||||| ||||| || Sbjct 54510 GTATGGGTTTCCATGAAAATCTGCATCTT 54482 >seq66463 Length=18175 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| ||||| ||| ||| || || || ||| ||||||||||| | | || || | Sbjct 9838 TCTCAGCACAAGACGAAA-GTGGACTCCTTTGGAATGTTGTAACC----AAAGTACGTCC 9784 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||| || |||||||| ||| | | |||| ||||| | ||||||||||||||||| Sbjct 9783 ACCTTCCAGTTGCTTGCCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGAATTCCTTCTTT 9724 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || | || || ||||||| || | |||||| || || | || | ||| | Sbjct 9723 ATCCCGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAGCCTCCAGAGTGAT 9664 Query 64408 GG-TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||| || || | ||||| |||||||| ||||| Sbjct 9663 GGTTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 9627 >seq104951 Length=12537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | || | || || ||||| | ||||| || |||| || ||||| | || Sbjct 11030 AAGCACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATC 11089 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||| ||||| || |||| || ||||||||||| || || || || || || || Sbjct 11090 CTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 11149 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA-CTTCTACAGTTACG 64408 ||| | |||| ||||| || || | || |||| || || | ||| | || | | Sbjct 11150 TTGGA-TTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATG 11208 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| |||| ||||| | || || ||||| Sbjct 11209 GTCTTGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498642387620000