Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 93.3 4e-14
>seq63810
Length=35167
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||| || || || || ||||| |||| |
Sbjct 27948 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCA 28007
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | ||||| ||||| || || || || |||||||| ||| || || |
Sbjct 28008 AAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACA 28067
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||||||||| | || | || ||||| |||| || ||
Sbjct 28068 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTC 28127
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 28128 ACAAAGATCTGCAT 28141
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||| || || || || ||||| |||| |
Sbjct 27492 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCA 27551
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | ||||| ||||| || || || || |||||||| ||| || || |
Sbjct 27552 AAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACA 27611
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||||||||| | || | || ||||| |||| || ||
Sbjct 27612 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTC 27671
Query 138601 ACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 27672 ACGAAGATCTGCATG 27686
Score = 86.0 bits (94), Expect = 6e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || |||||||||||| || ||| || || || || ||||| |||| |
Sbjct 27720 GACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCA 27779
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | ||||| ||||| || || || || |||||||| ||| || || |
Sbjct 27780 AAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACA 27839
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||||||||| | || | || ||||| |||| || ||
Sbjct 27840 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTC 27899
Query 138601 ACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 27900 ACGAAGATCTGCATG 27914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495266773560000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |