Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5492 91.5 1e-13 >seq5492 Length=9153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 3828 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 3769 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | | ||||| ||| |||||||| | |||| | || || || ||| Sbjct 3768 AAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3709 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | ||||| ||| || Sbjct 3708 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACC 3649 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 3648 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356692907742500