Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5492 86.0 6e-12 seq104951 84.2 2e-11 seq33159 82.4 7e-11 >seq5492 Length=9153 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 3831 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 3772 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||| ||| || | || || ||||| |||||| || |||||||| ||| Sbjct 3771 GACAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 3712 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| || ||| || Sbjct 3711 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCA 3652 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 3651 ACCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602 >seq104951 Length=12537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || |||||||| | || || || || | ||||| ||| || Sbjct 11033 CACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 11092 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| || | | |||| |||||||| || || || |||||||||||||| Sbjct 11093 CAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 11152 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA-CTTCGACGGTCACCGTTT 127082 |||||| |||| | ||| | ||||| | ||||| ||| || || | || | Sbjct 11153 GATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCT 11212 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||||| ||||| |||| |||||||| Sbjct 11213 TGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 >seq33159 Length=15523 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 2089 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 2148 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||| ||| || || || || ||||| |||||| || | | |||| ||| Sbjct 2149 GACACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGA 2208 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || | ||||| ||| || || ||| | | ||| | || || | || Sbjct 2209 GGAATTTCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCA 2268 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| |||||||||||||| Sbjct 2269 ACCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 2318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474546826520000