Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12448 89.7 5e-13 seq124007 84.2 2e-11 >seq12448 Length=17785 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || |||||||| ||||| || || || |||| ||| || || || || || || Sbjct 3325 AGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCAT 3384 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| |||| ||| || ||||| | |||| || |||||| | || ||||| |||||| Sbjct 3385 CCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCT 3444 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||| || || || ||| | ||||| || || || | || || ||||| || Sbjct 3445 TTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTG 3504 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || || || ||||| || ||||| |||||| Sbjct 3505 ATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATC 3543 >seq124007 Length=20016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || || || ||||||||||||||||| |||| ||| |||||| ||| ||| Sbjct 15386 GAGACAGGTACCCCATACATGCTCTACAAAGATTCCTGTAACCGGAAAAGCAACCAGCAG 15445 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||| ||||||| || ||||| || ||||| ||| | ||||| Sbjct 15446 AACCTGGGAACGATCAAATGCAGCAATCTGTGCACAGAAAT 15486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451096368580000