Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq111647 158 2e-33 >seq111647 Length=10039 Score = 158 bits (174), Expect = 2e-33 Identities = 204/282 (72%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| || | ||| ||| || ||||| ||||| || | || || || | ||| | Sbjct 6122 GGACAGCCTTGCACGTTGTTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATTTTA 6063 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 |||||||| || || || || ||||| ||||||||||| || || || || || Sbjct 6062 AAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTAGTTAGGAGAACATATAGGATTG 6003 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || || || || || || | ||| ||||||| |||||| Sbjct 6002 CCCATCAGTCCTTTCAAGGAGAAAGGTGCGCCAAGTTCTACCATGGTCTCACCAAAGATG 5943 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||| | | ||| || ||||| || | | | ||| || || || | || |||| ||| Sbjct 5942 GCATCTGCACGTGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCGATGTCA 5883 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||||||||| ||||| ||||| || |||||||| ||| Sbjct 5882 CCATAGAGGGCTTCTAACTCTGCAGCCATTTCCTTCTCTCCT 5841 Score = 122 bits (134), Expect = 1e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | || Sbjct 3468 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 3409 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 3408 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGATC 3349 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 |||||||| ||| | || || ||| ||||||||| | ||||||| || || Sbjct 3348 AGGGATAAACTGTTTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAG 3292 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||||| || || ||||| |||| ||| || Sbjct 2979 TCACCTTTCACGCCCATGGGAGTGGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTG 2920 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| | ||| ||||| ||||||||||| || |||||||| | | |||||| Sbjct 2919 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 2860 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || |||||||||| | || |||||| Sbjct 2859 GGCGGGCTGTCAATCAAATGTGATCTGGCT 2830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722276020700000