Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq111647 158 2e-33
>seq111647
Length=10039
Score = 158 bits (174), Expect = 2e-33
Identities = 204/282 (72%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953
||||| || | ||| ||| || ||||| ||||| || | || || || | ||| |
Sbjct 6122 GGACAGCCTTGCACGTTGTTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATTTTA 6063
Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013
|||||||| || || || || ||||| ||||||||||| || || || || ||
Sbjct 6062 AAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTAGTTAGGAGAACATATAGGATTG 6003
Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073
|||| || ||||||||||| || || || || || || | ||| ||||||| ||||||
Sbjct 6002 CCCATCAGTCCTTTCAAGGAGAAAGGTGCGCCAAGTTCTACCATGGTCTCACCAAAGATG 5943
Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133
||| | | ||| || ||||| || | | | ||| || || || | || |||| |||
Sbjct 5942 GCATCTGCACGTGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCGATGTCA 5883
Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|||||||||||||| ||||| ||||| || |||||||| |||
Sbjct 5882 CCATAGAGGGCTTCTAACTCTGCAGCCATTTCCTTCTCTCCT 5841
Score = 122 bits (134), Expect = 1e-22
Identities = 133/177 (75%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | ||
Sbjct 3468 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 3409
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || ||||||||||||||
Sbjct 3408 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGATC 3349
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|||||||| ||| | || || ||| ||||||||| | ||||||| || ||
Sbjct 3348 AGGGATAAACTGTTTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAG 3292
Score = 109 bits (120), Expect = 8e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| |||||||| || || ||||| |||| ||| ||
Sbjct 2979 TCACCTTTCACGCCCATGGGAGTGGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTG 2920
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| | ||| ||||| ||||||||||| || |||||||| | | ||||||
Sbjct 2919 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 2860
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| || |||||||||| | || ||||||
Sbjct 2859 GGCGGGCTGTCAATCAAATGTGATCTGGCT 2830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 722276020700000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |