Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq48881 141 2e-28 seq33159 141 2e-28 seq63810 134 3e-26 seq5492 132 1e-25 seq12448 123 6e-23 seq157463 116 9e-21 seq159105 113 1e-19 seq90327 105 2e-17 seq78565 100 7e-16 >seq48881 Length=14873 Score = 141 bits (156), Expect = 2e-28 Identities = 163/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || |||||||| || |||| ||||||||||| | ||| | ||||| Sbjct 7401 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 7460 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || || || || || Sbjct 7461 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 7520 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | || || |||| ||||| || Sbjct 7521 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 7580 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| || || ||||| |||||||| |||||| Sbjct 7581 CTTGCCCGTCAGGGTCTTCACGAAAATTTG---CATTTT 7616 >seq33159 Length=15523 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || ||||| ||||||||||| | ||||||||||| || ||| Sbjct 2098 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTG 2157 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || || ||||| || | | | | || ||| |||| || Sbjct 2158 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCT 2217 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | || |||| | ||| || || | Sbjct 2218 TCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGG 2277 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || |||||||||||||| || Sbjct 2278 GTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTG 2315 Score = 91.5 bits (100), Expect = 3e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| ||||||||||| | ||| || | || |||||| Sbjct 2197 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTACAACA 2138 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 | || || ||||| |||||||| ||||| ||||||||||| Sbjct 2137 TTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 2098 >seq63810 Length=35167 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||| | || ||| | ||||||| Sbjct 27930 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 27989 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | ||||||||||| || || || ||| || Sbjct 27990 TCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCT 28049 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || |||| ||||| ||| Sbjct 28050 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 28109 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| || || Sbjct 28110 TTACCGGTCAAGGTCTTCACAAAGATCTG 28138 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||| | || ||| | ||||||| Sbjct 27474 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 27533 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | ||||||||||| || || || ||| || Sbjct 27534 TCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCT 27593 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || |||| ||||| ||| Sbjct 27594 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 27653 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 27654 TTACCGGTCAAGGTCTTCACGAAGATCTG 27682 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || |||| ||||||||| | || ||| | ||||||| Sbjct 27702 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 27761 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | ||||||||||| || || || ||| || Sbjct 27762 TCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCT 27821 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || |||| ||||| ||| Sbjct 27822 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 27881 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 27882 TTACCGGTCAAGGTCTTCACGAAGATCTG 27910 Score = 107 bits (118), Expect = 5e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || ||||| |||||||| |||| ||||||||| | || ||| | |||||| Sbjct 27245 CAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 27304 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || | || ||| || Sbjct 27305 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGCTGCCCTCTTTGTC 27364 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || |||| |||||| | | || || |||| ||||| | Sbjct 27365 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGA 27424 Query 199597 CTTACCCGT-GAGAGTTTTCACAAAAATTTG 199626 || ||| || ||| || ||||| || || || Sbjct 27425 CTGACCGGTCGAG-GTCTTCACGAAGATCTG 27454 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| ||||| || ||| ||||||||||| | ||| || |||| |||||| |||||||| Sbjct 27784 ATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAA 27725 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| ||||| || Sbjct 27724 GAGTCCACTCTGCACCTGGT 27705 >seq5492 Length=9153 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || ||||| ||||||||||| | ||||||||||| |||||| Sbjct 3822 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 3763 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||| | ||||| || || ||||| || | ||||| || ||| ||||||| Sbjct 3762 CACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCT 3703 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| || || | ||| || || | Sbjct 3702 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGG 3643 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || |||||||| ||||| || Sbjct 3642 GTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTG 3605 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| ||||||||| | |||||| | || |||||| Sbjct 3723 AAAGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGACTACAACA 3782 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 | || || ||||| |||||||| ||||| ||||||||||| Sbjct 3783 TTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 3822 >seq12448 Length=17785 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || || || ||||||| ||| | ||| ||||||| || ||| | Sbjct 3324 AAGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCA 3383 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| || || ||||| || | ||||| | ||| ||||||||| Sbjct 3384 TCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTC 3443 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | ||||| ||||| || || ||| | || || | | ||| || || | || Sbjct 3444 TTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGT 3503 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || || |||||||| ||||| || Sbjct 3504 GATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTG 3539 >seq157463 Length=7943 Score = 116 bits (128), Expect = 9e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || ||||| ||||| ||||| | ||||||||| | |||||| Sbjct 340 CGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAAAGTA 399 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||||| || || ||||| | | ||||| | ||| ||||||| Sbjct 400 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGAATTCCT 459 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||| ||| | ||| | || | | | ||| || || | Sbjct 460 TCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGA 519 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAA 199622 ||||| ||||| || || || ||||||| |||| Sbjct 520 GTGATGGTCTTCCCAGTAAGGATTTTCACGAAAA 553 Score = 100 bits (110), Expect = 7e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| || ||||| || || |||||| ||||||||||| | |||||| | || |||||| Sbjct 439 AAAGACCGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTACAACA 380 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 | || |||||||| |||||||| ||||| ||||||||||| Sbjct 379 TTCAAAAAGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 340 >seq159105 Length=10725 Score = 113 bits (124), Expect = 1e-19 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || |||| ||||||||| | | ||||||||||| |||||| | Sbjct 5637 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTGGAATGTTGTAGTCAGACAAAGTGC 5696 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||| |||||| ||||| || || ||| | || | |||| | ||| |||||||| Sbjct 5697 ATCCAGCTTCCACTTGCTTGCCAGCAAAGCTCAGTCTTTGCTAACCAGGAGCAATTCCTT 5756 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| |||||| ||| | ||| | || || | | ||| || || | | Sbjct 5757 CCTTATCCTGGATCTTTGTCTTTATATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGG 5816 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || | || || |||||||||||||| || Sbjct 5817 TGATTGTTTTCCTAGTAAGGGTTTTCACAAAAATCTG 5853 >seq90327 Length=63722 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||| ||| | || || ||||| |||||||||| | ||||||||||| ||| || Sbjct 54705 CGAAGTGTCAAAATCAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTA 54646 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || || ||| | || | ||||| || ||| ||||||| Sbjct 54645 CATCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCT 54586 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| || || ||| || |||| | ||| || || | Sbjct 54585 TCCTTATCCTGGATCTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGA 54526 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | |||| || ||||| || Sbjct 54525 GTGATGGTCTTCCCGGTATGGGTTTCCATGAAAATCTG 54488 >seq78565 Length=14118 Score = 100 bits (110), Expect = 7e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || ||| | ||||||||| | | ||||||||||| ||||| | Sbjct 248 AAGTCTCAACACAAGATGAAGAATGGACTCCTTTGGAATGTTGTAGTCAGACAAAGCGCG 307 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| |||||||| || ||||| || ||||| || || ||||||||| Sbjct 308 TCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTTTTTGCTGATCAAGAGGAATTCCTTC 367 Query 199531 TCGCTCCTGAATC 199543 ||||| ||| Sbjct 368 CTTATCCTGGATC 380 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||||||| ||||| || |||||||| ||||||||||| | ||||| | || |||||| Sbjct 345 AAAAACTGATCTTTGCTGGAAAGCAACTGGAAGATGGACGCGCTTTGTCTGACTACAACA 286 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 201027 | | || ||||| | |||||| ||||| ||||||||| Sbjct 285 TTCCAAAGGAGTCCATTCTTCATCTTGTGTTGAGACTT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176497258253500