Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq63810 149 7e-31 seq48881 143 3e-29 seq32806 100 3e-16 seq104951 86.0 7e-12 >seq63810 Length=35167 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| | ||||| |||| || |||||| ||||| |||||||||| Sbjct 27913 TGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 27972 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| |||||||| || ||||| ||||||||||| | | Sbjct 27973 ACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGG 28032 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| |||||| ||||| || | | ||||| || | |||| Sbjct 28033 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 28092 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| |||||||| || || |||| || || |||||||| |||||| Sbjct 28093 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| | ||||| |||| || |||||| ||||| |||||||||| Sbjct 27457 TGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 27516 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| |||||||| || ||||| ||||||||||| | | Sbjct 27517 ACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGG 27576 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| |||||| ||||| || | | ||||| || | |||| Sbjct 27577 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 27636 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| || || |||| || || || ||||| ||||| Sbjct 27637 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| | ||||| |||| || ||| || ||||| |||||||||| Sbjct 27685 TGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 27744 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| |||||||| || ||||| ||||||||||| | | Sbjct 27745 ACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGG 27804 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| |||||| ||||| || | | ||||| || | |||| Sbjct 27805 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 27864 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| || || |||| || || || ||||| ||||| Sbjct 27865 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || |||| |||||||||| || |||||| ||||| ||||||||||| Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||| |||||||| || ||||| | ||||||||| | || Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 || ||| ||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27410 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||| | || ||| || || || ||||| ||||| Sbjct 27411 TCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457 >seq48881 Length=14873 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 7386 GCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 7445 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 7446 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 7505 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || |||||| ||| |||||| ||| | || | | |||||||| | ||||| Sbjct 7506 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 7565 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||||||||| || || || || |||||||||||| Sbjct 7566 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTTG 7617 >seq32806 Length=18495 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || ||| || |||||||| ||||| || |||||||| | ||||| Sbjct 13611 CACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTC 13552 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| |||| ||| || || ||||||||||| | || | || |||||| || Sbjct 13551 CAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTG 13492 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 | | || |||| || | | || || || | ||||| || | |||||||| || Sbjct 13491 GGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCTT 13432 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || |||||||| ||||| Sbjct 13431 GCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402 >seq104951 Length=12537 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| || ||| || | ||| || ||||| || |||||||| | Sbjct 11027 ACGAAGCACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCC 11086 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| ||||| | || |||| ||||||||||| | || | || |||||| Sbjct 11087 ATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTT 11146 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA-CATCCACCGTGA 46556 ||| ||| || |||| | | | ||||| || | || | | | | |||| Sbjct 11147 GTCTTGGATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGA 11206 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| ||||| ||||||| ||||| Sbjct 11207 TGGTCTTGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564104390460000