Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 100 2e-16
>seq63810
Length=35167
Score = 100 bits (110), Expect = 2e-16
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| |||| | ||| || |||| |||| |||| ||||| || || || || ||||
Sbjct 27686 GCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 27745
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| | |||| |||| |||| ||||| ||| |||| || || |||||||| || | |||
Sbjct 27746 CAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGG 27805
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCC 39669
| ||| |||||||| || || || | || | | ||||| || ||| ||
Sbjct 27806 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCT--CC 27863
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|| |||| || || || ||||| || || || || |||||||||||||||
Sbjct 27864 ACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 27914
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| |||| | ||| || |||| |||| |||| || || || || || || ||||
Sbjct 27458 GCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 27517
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| | |||| |||| |||| ||||| ||| |||| || || |||||||| || | |||
Sbjct 27518 CAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGG 27577
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCC 39669
| ||| |||||||| || || || | || | | ||||| || ||| ||
Sbjct 27578 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCT--CC 27635
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|| |||| || || || ||||| || || || || |||||||||||||||
Sbjct 27636 ACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 27686
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| |||| | ||| || |||| |||| |||| || || || || || || ||||
Sbjct 27914 GCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 27973
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| | |||| |||| |||| ||||| ||| |||| || || |||||||| || | |||
Sbjct 27974 CAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGG 28033
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCC 39669
| ||| |||||||| || || || | || | | ||||| || ||| ||
Sbjct 28034 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCT--CC 28091
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||| || || || ||||| || || || || || |||||||||||
Sbjct 28092 ACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 28141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346690112496500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |