Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq48881 147 2e-30
seq63810 127 2e-24
seq104951 123 2e-23
seq113583 104 2e-17
seq2401 102 8e-17
seq89363 95.1 1e-14
seq32806 89.7 5e-13
seq18747 86.0 6e-12
seq123873 84.2 2e-11
seq93939 84.2 2e-11
>seq48881
Length=14873
Score = 147 bits (162), Expect = 2e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| || || || |||||||| ||||||||| | || || ||| ||
Sbjct 7616 AAAATGCAAATTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 7557
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| ||||| | | | | | || | || |||| || || ||||| || ||| | |||
Sbjct 7556 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 7497
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||
Sbjct 7496 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 7437
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||| || || |||| ||||| |||| |||||| |||| || |||
Sbjct 7436 AACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGGC 7386
>seq63810
Length=35167
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || || ||||||||| | || || ||| |||
Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||||||||| || ||| | |||||
Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27566
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|||||| | || | || |||||||||||||| || | ||||| || ||||||||||
Sbjct 27565 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27506
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| ||||| | || ||||| |||| || ||| | ||||| |||
Sbjct 27505 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGGC 27458
Score = 125 bits (138), Expect = 7e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || | || || || ||||||||| | || || ||| |||
Sbjct 28142 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 28083
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | || |||| ||||||||||| || ||| | |||||
Sbjct 28082 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 28023
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| | || | || |||||||||||||| || | ||||| || |||||||||
Sbjct 28022 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27963
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || ||||| |||| || ||| | ||||| |||
Sbjct 27962 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGGC 27914
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || || ||||||||| | || || ||| |||
Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||||||||| || ||| | |||||
Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27794
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|||||| | || | || |||||||||||||| || | ||||| || ||||||||||
Sbjct 27793 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27734
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| || || | || ||||| |||| || ||| | ||||| |||
Sbjct 27733 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGGC 27686
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTC-ACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||| || ||||| || || ||| || || | |||||||| | || || ||| |||
Sbjct 27457 ATGCAGATCTTCGTGAAGAC-CTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAG 27399
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | || |||| ||||||||||| | ||| | |||||
Sbjct 27398 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCAGCCCCCCTGACCA 27339
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || |||||||||||||| || | ||||| || |||||||||
Sbjct 27338 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27279
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || |||||| |||| ||||| ||||| || ||
Sbjct 27278 CATCCAGAAGGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGG 27231
>seq104951
Length=12537
Score = 123 bits (136), Expect = 2e-23
Identities = 167/229 (73%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACG-TCGAGGCCAC 38302
||||| || || | ||||| || || ||||| |||||||| || | | ||||| |||
Sbjct 11243 ATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCAG 11184
Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | ||||| | |||| ||||||| ||||| ||||| || || | ||||
Sbjct 11183 TGACACTATTGAAAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 11125
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || |||| | ||||||||||||||| || | ||||| ||| ||||| |
Sbjct 11124 AGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATA 11065
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| | || || | || ||||| |||||||| ||| || | || ||
Sbjct 11064 ACATCGAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGTGGGGTGG 11016
>seq113583
Length=22641
Score = 104 bits (114), Expect = 2e-17
Identities = 156/214 (73%), Gaps = 7/214 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || |||||||| |||||||| |||| |||||| |||
Sbjct 17647 ATGCAGATCTT-GTGAAGACCCTGACGGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 17589
Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| || | | | |||| |||||| ||| | ||||| || |||||| || |
Sbjct 17588 GACACTACTGAGCATG-TCAAAGCTCAAATCCAAGACCAGGAGGGCAT-CCCGCCTGAGC 17531
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || |||| ||||||||||||||||| || | |||| |||| ||||| |
Sbjct 17530 AGCAGCGTCTGATTTGTGCGGGCAAACAGCTGGAGGATGGCAGCACTCTCA--GACTATA 17473
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
| ||||| || || | || |||| ||||||||
Sbjct 17472 ATATCCAGAAAGAGTCCACCGTGCACTTGGTGCT 17439
>seq2401
Length=18371
Score = 102 bits (112), Expect = 8e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || | || || || || || ||||| ||||||||| | || |||| | |||
Sbjct 145 ATGCAGATCTGTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGGGCCCAAT 204
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| ||| ||| |||| ||||| || || | |||||
Sbjct 205 GACACTATTGAGAATGTCAAAGCTAAACTCCAAAACAAGGAGGGTATCCCACCTGACCAG 264
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| || |||||||||||||| || | ||||| ||| ||||| ||
Sbjct 265 CAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAT 324
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462
||||| || | | || ||||| |||||||| ||| ||
Sbjct 325 ATCCAGAAAGCGTCCACTCTGCACTTGGTGCTTCGTCTG 363
>seq89363
Length=18264
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/224 (71%), Gaps = 7/224 (3%)
Strand=Plus/Minus
Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305
||| || || || || || || | |||||| ||||| || |||| |||||| ||| ||
Sbjct 15993 GCAGATCTTTGTGAAGACCCTGATGGGCAAGACCAT-AC--TCGAGGTCGAGCCCAGTGA 15937
Query 38306 CAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364
|| | || |||| | || | ||||||| ||||| ||||| || || | ||||| |
Sbjct 15936 CACCACTGAGAACG-TCAACGCTAAAATCCAAGACAAGGAGGGCATCCCATCTGACCAGC 15878
Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424
|||| || ||| | ||||||||||||||| || | || ||| ||| || || || |
Sbjct 15877 AGCGACTGCTTTTTGAGGGCAAACAGCTGGAGGATG-GC-CACTCTCTTAGATTATAATA 15820
Query 38425 TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGC 38468
|||| || || | || ||||| |||||||| || || | |||
Sbjct 15819 TCCAGAAAGAGTCCACTCTGCACTTGGTGCTTTGTCTGTGGGGC 15776
>seq32806
Length=18495
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| |||||||| |||| || ||| |||
Sbjct 13402 ATGCACATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTGGAGCCCAGT 13461
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | |||| |||| || || || ||||| || || | |||||
Sbjct 13462 GATACTATTGAGAATGTCAAAGCTAAAACCCAAGATAAGGAGGGCATCCCACCTGACCAG 13521
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | | || || |||||||||||||||| | ||||| ||| ||||| ||
Sbjct 13522 CAGCGTCGGACTTTTGCCAGCAAACAGCTGGACGATGGCCGCACTCTCTCAGACTAAAAT 13581
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
||||| || || || ||||| ||||||||
Sbjct 13582 ATCCAGAAAGAGTTCACTCTGCACTTGGTGCT 13613
>seq18747
Length=37247
Score = 86.0 bits (94), Expect = 6e-12
Identities = 111/150 (74%), Gaps = 4/150 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || |||||||| |||||||| |||| ||| || ||
Sbjct 35674 ATGCAGATCTT-GTGAAGACCCTGACGGGCAAGACCATCACACTCGAGGTCAAGCCCCGT 35616
Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| ||| || | |||| ||||||| ||||| ||||| || || |||||||
Sbjct 35615 GACACTACTGCGAAGTC--AAAGCTAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 35558
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCT 38392
||||| || |||| ||||||||||||||
Sbjct 35557 GCAGCGTCTGATTTTTGCGGGCAAACAGCT 35528
>seq123873
Length=8769
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/214 (71%), Gaps = 9/214 (4%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || | | ||| | |||||| |||| ||| || |||
Sbjct 109 ATGCAGATCTT-GTGAAGACCCTGATAGACAAGAACATCACACTCGAGGTCAAGCCCAGT 167
Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| || || | | |||| ||||||| ||||| ||| || |||||| ||||
Sbjct 168 GACACTACTGAGAATG-TCAAAGCTAAAATCCAAGACAA---GGGCAT-CCCGCCTGACC 222
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || |||| || |||||||||||||| || | | ||| ||| ||||| |
Sbjct 223 AGCAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGACTATA 282
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
| ||||| || || | || ||||| ||||||||
Sbjct 283 ATATCCAGAAAGAGTCCAC-CTGCACTTGGTGCT 315
>seq93939
Length=21031
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || | || || || |||||||| |||||| || | || |||||| |||
Sbjct 20549 ATGCAGATCTTTGGGAAGACCCTGACGGGCAAGACCATCCCCCTGGAGGTCGAGCCCAGT 20608
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | || | | | |||| ||||| ||||| ||||| || || | ||| |
Sbjct 20609 GACACCATGGAGAATGTCAAAGCTCTAATCCAAGACAAGGAGGGCATCCCACCTGACTAG 20668
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|||| || ||| || |||||||||||||| || | ||||| | | |||| ||
Sbjct 20669 CAGCATCTGGTTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCGCTTAGACTCTAAT 20728
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGC 38454
| ||| || | | || ||||| |||||||
Sbjct 20729 AGCCAGAAAGGGTCCACCCTGCACTTGGTGC 20759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499169328320000
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