Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq48881 147 2e-30 seq63810 127 2e-24 seq104951 123 2e-23 seq113583 104 2e-17 seq2401 102 8e-17 seq89363 95.1 1e-14 seq32806 89.7 5e-13 seq18747 86.0 6e-12 seq123873 84.2 2e-11 seq93939 84.2 2e-11 >seq48881 Length=14873 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || |||||||| ||||||||| | || || ||| || Sbjct 7616 AAAATGCAAATTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 7557 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||||| | | | | | || | || |||| || || ||||| || ||| | ||| Sbjct 7556 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 7497 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || |||||| Sbjct 7496 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 7437 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || |||| ||||| |||| |||||| |||| || ||| Sbjct 7436 AACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGGC 7386 >seq63810 Length=35167 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || || ||| ||| Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| || ||| | ||||| Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27566 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||||| | || | || |||||||||||||| || | ||||| || |||||||||| Sbjct 27565 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27506 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| || ||| | ||||| ||| Sbjct 27505 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGGC 27458 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || | || || || ||||||||| | || || ||| ||| Sbjct 28142 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 28083 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||||||||| || ||| | ||||| Sbjct 28082 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 28023 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || |||||||||||||| || | ||||| || ||||||||| Sbjct 28022 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27963 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||| || ||| | ||||| ||| Sbjct 27962 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGGC 27914 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || || ||| ||| Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| || ||| | ||||| Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27794 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||||| | || | || |||||||||||||| || | ||||| || |||||||||| Sbjct 27793 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27734 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| |||| || ||| | ||||| ||| Sbjct 27733 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGGC 27686 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTC-ACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||| || ||||| || || ||| || || | |||||||| | || || ||| ||| Sbjct 27457 ATGCAGATCTTCGTGAAGAC-CTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAG 27399 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||||||||| | ||| | ||||| Sbjct 27398 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCAGCCCCCCTGACCA 27339 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || |||||||||||||| || | ||||| || ||||||||| Sbjct 27338 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27279 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||||| |||| ||||| ||||| || || Sbjct 27278 CATCCAGAAGGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGG 27231 >seq104951 Length=12537 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACG-TCGAGGCCAC 38302 ||||| || || | ||||| || || ||||| |||||||| || | | ||||| ||| Sbjct 11243 ATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCAG 11184 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| ||||||| ||||| ||||| || || | |||| Sbjct 11183 TGACACTATTGAAAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 11125 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| | ||||||||||||||| || | ||||| ||| ||||| | Sbjct 11124 AGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATA 11065 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| | || || | || ||||| |||||||| ||| || | || || Sbjct 11064 ACATCGAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGTGGGGTGG 11016 >seq113583 Length=22641 Score = 104 bits (114), Expect = 2e-17 Identities = 156/214 (73%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| |||| |||||| ||| Sbjct 17647 ATGCAGATCTT-GTGAAGACCCTGACGGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 17589 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| || | | | |||| |||||| ||| | ||||| || |||||| || | Sbjct 17588 GACACTACTGAGCATG-TCAAAGCTCAAATCCAAGACCAGGAGGGCAT-CCCGCCTGAGC 17531 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||||||||||||||||| || | |||| |||| ||||| | Sbjct 17530 AGCAGCGTCTGATTTGTGCGGGCAAACAGCTGGAGGATGGCAGCACTCTCA--GACTATA 17473 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 | ||||| || || | || |||| |||||||| Sbjct 17472 ATATCCAGAAAGAGTCCACCGTGCACTTGGTGCT 17439 >seq2401 Length=18371 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || | || || || || || ||||| ||||||||| | || |||| | ||| Sbjct 145 ATGCAGATCTGTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGGGCCCAAT 204 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||| ||| |||| ||||| || || | ||||| Sbjct 205 GACACTATTGAGAATGTCAAAGCTAAACTCCAAAACAAGGAGGGTATCCCACCTGACCAG 264 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || |||||||||||||| || | ||||| ||| ||||| || Sbjct 265 CAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAT 324 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||||| || | | || ||||| |||||||| ||| || Sbjct 325 ATCCAGAAAGCGTCCACTCTGCACTTGGTGCTTCGTCTG 363 >seq89363 Length=18264 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/224 (71%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||| || || || || || || | |||||| ||||| || |||| |||||| ||| || Sbjct 15993 GCAGATCTTTGTGAAGACCCTGATGGGCAAGACCAT-AC--TCGAGGTCGAGCCCAGTGA 15937 Query 38306 CAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 || | || |||| | || | ||||||| ||||| ||||| || || | ||||| | Sbjct 15936 CACCACTGAGAACG-TCAACGCTAAAATCCAAGACAAGGAGGGCATCCCATCTGACCAGC 15878 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 |||| || ||| | ||||||||||||||| || | || ||| ||| || || || | Sbjct 15877 AGCGACTGCTTTTTGAGGGCAAACAGCTGGAGGATG-GC-CACTCTCTTAGATTATAATA 15820 Query 38425 TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGC 38468 |||| || || | || ||||| |||||||| || || | ||| Sbjct 15819 TCCAGAAAGAGTCCACTCTGCACTTGGTGCTTTGTCTGTGGGGC 15776 >seq32806 Length=18495 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| |||| || ||| ||| Sbjct 13402 ATGCACATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTGGAGCCCAGT 13461 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| |||| || || || ||||| || || | ||||| Sbjct 13462 GATACTATTGAGAATGTCAAAGCTAAAACCCAAGATAAGGAGGGCATCCCACCTGACCAG 13521 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | | || || |||||||||||||||| | ||||| ||| ||||| || Sbjct 13522 CAGCGTCGGACTTTTGCCAGCAAACAGCTGGACGATGGCCGCACTCTCTCAGACTAAAAT 13581 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| || || || ||||| |||||||| Sbjct 13582 ATCCAGAAAGAGTTCACTCTGCACTTGGTGCT 13613 >seq18747 Length=37247 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| |||| ||| || || Sbjct 35674 ATGCAGATCTT-GTGAAGACCCTGACGGGCAAGACCATCACACTCGAGGTCAAGCCCCGT 35616 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| ||| || | |||| ||||||| ||||| ||||| || || ||||||| Sbjct 35615 GACACTACTGCGAAGTC--AAAGCTAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 35558 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCT 38392 ||||| || |||| |||||||||||||| Sbjct 35557 GCAGCGTCTGATTTTTGCGGGCAAACAGCT 35528 >seq123873 Length=8769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || | | ||| | |||||| |||| ||| || ||| Sbjct 109 ATGCAGATCTT-GTGAAGACCCTGATAGACAAGAACATCACACTCGAGGTCAAGCCCAGT 167 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| || || | | |||| ||||||| ||||| ||| || |||||| |||| Sbjct 168 GACACTACTGAGAATG-TCAAAGCTAAAATCCAAGACAA---GGGCAT-CCCGCCTGACC 222 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| || |||||||||||||| || | | ||| ||| ||||| | Sbjct 223 AGCAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGACTATA 282 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 | ||||| || || | || ||||| |||||||| Sbjct 283 ATATCCAGAAAGAGTCCAC-CTGCACTTGGTGCT 315 >seq93939 Length=21031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || | || || || |||||||| |||||| || | || |||||| ||| Sbjct 20549 ATGCAGATCTTTGGGAAGACCCTGACGGGCAAGACCATCCCCCTGGAGGTCGAGCCCAGT 20608 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | || | | | |||| ||||| ||||| ||||| || || | ||| | Sbjct 20609 GACACCATGGAGAATGTCAAAGCTCTAATCCAAGACAAGGAGGGCATCCCACCTGACTAG 20668 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||| || ||| || |||||||||||||| || | ||||| | | |||| || Sbjct 20669 CAGCATCTGGTTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCGCTTAGACTCTAAT 20728 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGC 38454 | ||| || | | || ||||| ||||||| Sbjct 20729 AGCCAGAAAGGGTCCACCCTGCACTTGGTGC 20759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499169328320000