Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq63810 145 2e-29 seq5492 136 9e-27 seq48881 132 1e-25 seq157463 127 5e-24 seq33159 123 6e-23 seq90327 102 2e-16 seq102059 98.7 2e-15 seq109872 95.1 3e-14 seq89363 95.1 3e-14 seq104951 93.3 9e-14 seq74389 91.5 3e-13 seq123873 84.2 5e-11 >seq63810 Length=35167 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| |||| ||||| Sbjct 27692 TCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGT 27751 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || || ||||| | || || ||||| || || ||||| Sbjct 27752 GCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCC 27811 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || |||||| ||||| |||||||| ||| ||||| || Sbjct 27812 CTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 27868 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 27869 CAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| ||||||||||| || || || ||||| |||| ||||| Sbjct 27464 TCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 27523 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || || ||||| | || || ||||| || || ||||| Sbjct 27524 GCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCC 27583 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || |||||| ||||| |||||||| ||| ||||| || Sbjct 27584 CTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 27640 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 27641 CAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 138 bits (152), Expect = 3e-27 Identities = 167/226 (74%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| ||||||||||| || || || ||||| |||| ||||| Sbjct 27920 TCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 27979 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || || ||||| | || || ||||| || || ||||| Sbjct 27980 GCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCC 28039 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || |||||| ||||| |||||||| ||| ||||| || Sbjct 28040 CTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 28096 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| || ||||| || || || || | |||||| Sbjct 28097 CAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||||||||| || || || ||||| |||| ||||| | |||||||| Sbjct 27249 ACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27308 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || |||| ||||||||||| Sbjct 27309 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGCTGCCCTCTTTGTCTTGG 27368 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| ||||| || ||||| | | | Sbjct 27369 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGAC 27425 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||| | || || ||||| | ||||| Sbjct 27426 TGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457 >seq5492 Length=9153 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | | Sbjct 3819 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCAC 3760 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||||| || || ||||| |||| ||| || || |||||||| ||||| Sbjct 3759 CCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 3700 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || | || ||| | ||| || || ||||| Sbjct 3699 TTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTG 3640 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 3639 ATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602 >seq48881 Length=14873 Score = 132 bits (146), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||| || | |||||| | |||||||| Sbjct 7405 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 7464 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || || ||||| || || || || Sbjct 7465 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 7524 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| ||||| || ||||| | ||||| Sbjct 7525 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 7584 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || |||| || || ||||| | |||||||| Sbjct 7585 CCCGTCAGGGTCTTCACGAAAATTTGCATTT 7615 >seq157463 Length=7943 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||||||||||||||||||||| ||||| || | | ||| | Sbjct 343 AGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAAAGTACGT 402 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || ||||| ||| ||| || | |||||||| ||||| Sbjct 403 CCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGAATTCCTTCC 462 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || | || ||| | || || || || |||| ||| || ||||| || Sbjct 463 TTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGAGTG 522 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||| ||||| | ||||| Sbjct 523 ATGGTCTTCCCAGTAAGGATTTTCACGAAAAGCTGCAT 560 >seq33159 Length=15523 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 2101 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCAT 2160 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| || | || |||||||| |||| Sbjct 2161 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCC 2220 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || || || ||| || || ||||| Sbjct 2221 TTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTG 2280 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| || || | ||||| Sbjct 2281 ATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 2318 >seq90327 Length=63722 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 ||| |||||| || |||||||||||||| |||| ||| ||||| || | |||| || | Sbjct 54702 AGTGTCAAAATCAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAG-GTACA 54644 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||| | |||| ||| || || |||||||| ||||| Sbjct 54643 TCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTC 54584 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || || || || || | || || || ||| || ||||| || Sbjct 54583 CTTATCCTGGATCTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGT 54524 Query 195102 AACCGTCTTTCCTGT 195116 | ||||| || || Sbjct 54523 GATGGTCTTCCCGGT 54509 >seq102059 Length=16704 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||| || || | ||||| |||| ||||| | |||||||| ||||| Sbjct 6010 GTGCAGAGTGGACTTCTTCTGGGTGTTGTAGTCGGACAGAGTGCATCCATCTTCCAGCTG 6069 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | || ||||| || || ||||| ||||||||||| || || Sbjct 6070 TTTCCCAGCAAAGATCTACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTT 6129 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||| ||||| |||||||| Sbjct 6130 GGCCTTGACATTCTCGATGGTGTC 6153 >seq109872 Length=19372 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTA 195000 ||||||||||||||||| ||||| || || | ||| | | ||||| || ||||| || Sbjct 16148 AGAGTGGACTCTTTTTGCATATTATAGTCTGAGAGAATGCGACCATCCTCCAGCTGTTTG 16207 Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || || | || | ||| ||||| || || |||||||| ||||||| ||||| Sbjct 16208 CCCGCAAAAAACAGACATTGCTGGTCAGGTGGGATGCCTTCCGTGTCTTGGATTTTAGCT 16267 Query 195061 TTGACGTTCTCAATGGTGTC 195080 ||||| |||||| | ||||| Sbjct 16268 TTGACATTCTCAGTAGTGTC 16287 >seq89363 Length=18264 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || ||||| ||||| ||||| ||||| || ||||| Sbjct 15797 GTGCAGAGTGGACTCTTTCTGGATATTATAATCTAAGAGAGTGG--CCATCCTCCAGCTG 15854 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || | || | ||||| || ||||| | || ||||| || |||||||| ||||| Sbjct 15855 TTTGCCCTCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTGGATTTT 15914 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||||||||| ||||||| Sbjct 15915 AGCGTTGACGTTCTCAGTGGTGTC 15938 >seq104951 Length=12537 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| | || || || || | ||||| | ||||| || ||||| Sbjct 11039 GTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTG 11098 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || | || || || || || ||||| || || ||||| || |||||||| ||||| Sbjct 11099 TTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 11158 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||||| ||||| ||||| Sbjct 11159 GGCTTTGACGTTTTCAATAGTGTC 11182 >seq74389 Length=16610 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || ||||| || || | ||||| | ||||| || | ||| Sbjct 10470 GTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCATCTG 10411 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || | | ||||| || || ||||| || |||| ||| ||||| Sbjct 10410 TTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTGGATTTT 10351 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| ||||| || ||||| ||| || | ||||| || | ||||| || Sbjct 10350 AGCTTTGACATTCTCGATAGTGTC---ACTGGGCTCGATCTCAAGTGTGATGGTCTTGCC 10294 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | ||||| Sbjct 10293 CGTCAAGGTCTTCACAAAGATCTGCAT 10267 >seq123873 Length=8769 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || ||||| || || | ||||| ||||| || ||||| || ||| Sbjct 301 GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGCTGTTTGCCT 242 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || || || ||||| || || |||| | |||||||| ||||| ||| Sbjct 241 GCAAAAATCAGACGCTGCTGGTCAGGCGGGATGC---CCTTGTCTTGGATTTTAGCTTTG 185 Query 195064 ACGTTCTCAATGGTGTC 195080 || |||||| | ||||| Sbjct 184 ACATTCTCAGTAGTGTC 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107200055103500