Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 109 4e-19
seq104951 105 4e-18
seq113583 102 5e-17
seq74389 100 2e-16
seq32806 96.9 2e-15
seq2401 96.9 2e-15
>seq63810
Length=35167
Score = 109 bits (120), Expect = 4e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| ||||| ||||| || || | ||| |||| |||
Sbjct 27705 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27764
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || | || |||||||| | || | ||||| |||||
Sbjct 27765 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 27824
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | |||| || ||| || || | ||| ||||| |
Sbjct 27825 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 27882
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || | |||||||| |||||||||||
Sbjct 27883 TACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913
Score = 109 bits (120), Expect = 4e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || || | ||| |||| |||
Sbjct 27933 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27992
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || | || |||||||| | || | ||||| |||||
Sbjct 27993 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 28052
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | |||| || ||| || || | ||| ||||| |
Sbjct 28053 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 28110
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || | ||||||||||||||||||||
Sbjct 28111 TACCGGTCAAGGTCTTCACAAAGATCTGCAT 28141
Score = 105 bits (116), Expect = 4e-18
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || || | ||| |||| |||
Sbjct 27477 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27536
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || | || |||||||| | || | ||||| |||||
Sbjct 27537 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 27596
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | |||| || ||| || || | ||| ||||| |
Sbjct 27597 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 27654
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || | |||||||| |||||||||||
Sbjct 27655 TACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||||||||| | || |||| || | ||| || ||||| ||||| ||||| ||
Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | ||| |||| ||||||||||| |||||||| || | | |||||||| | ||
Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
||||| ||||| ||||| ||||| || || || | |||| || ||| |
Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 27408
Query 34933 CATCGACGGTTATGGTTTTTCCCGT-GAGAGTCTTCACAAAGATCTGCAT 34981
| || | ||| |||| | || || ||| |||||||| |||||||||||
Sbjct 27409 CCTCCAGGGTGATGGACTGACCGGTCGAG-GTCTTCACGAAGATCTGCAT 27457
>seq104951
Length=12537
Score = 105 bits (116), Expect = 4e-18
Identities = 150/210 (71%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||||| ||||||||||| || || | || |||| |||
Sbjct 11034 ACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCC 11093
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || |||| || || || |||||||| | || | |||||||||||
Sbjct 11094 AGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 11153
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC-AACATCGACGGTTATGGTTTT 34951
|| || ||||||| | | || | |||| || ||| | | | || || ||||| ||
Sbjct 11154 ATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCTT 11213
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || ||| |||||||||||||
Sbjct 11214 GCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243
>seq113583
Length=22641
Score = 102 bits (112), Expect = 5e-17
Identities = 153/212 (72%), Gaps = 9/212 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAG-GCTTCGTTCATCATC 34831
|||||||| | ||| |||||||| || |||||||| || || ||| | |||| ||
Sbjct 17442 ACCAAGTGCACGGTGGACTCTTTCTGGATATTATAGTCTGAGAGTGCTGC---CATCCTC 17498
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||||||| || ||| | || || || ||||| || |||| | ||||||| |||
Sbjct 17499 CAGCTGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTG 17558
Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
|| | |||||| ||||| | | |||| || ||| || |||| || |||||
Sbjct 17559 GATTTGAGCTTTGAC--ATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTC 17616
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| || |||||||| |||||||||||
Sbjct 17617 TTGCCCGTCAGGGTCTTCAC-AAGATCTGCAT 17647
>seq74389
Length=16610
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| || |||||||| || || | || |||| |||
Sbjct 10475 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 10416
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| |||||| |||||||| || || | | |||||| | || | ||||||||||
Sbjct 10415 ATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTGG 10356
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || || | |||| || ||| | || | || ||||| |
Sbjct 10355 ATTTTAGCTTTGAC--ATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCT 10298
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| | ||||||||||||||||||||
Sbjct 10297 TGCCCGTCAAGGTCTTCACAAAGATCTGCAT 10267
>seq32806
Length=18495
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| || || ||||| || || | || |||| |||
Sbjct 13610 ACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTCC 13551
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| | |||||| | | || |||||||| | || | |||||||| ||
Sbjct 13550 AGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTGG 13491
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
| || |||||| || || || | |||| || ||| || |||| || ||||| |
Sbjct 13490 GTTTTAGCTTTGAC--ATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCT 13433
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || |||||||||||||| |||||
Sbjct 13432 TGCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402
>seq2401
Length=18371
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||||| || |||||||| || || | || |||| |||
Sbjct 353 ACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 294
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || || || |||||||| | || | ||||||||||
Sbjct 293 AGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTGG 234
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
| || |||||| || || || | ||| || | | || || | ||| ||||| |
Sbjct 233 AGTTTAGCTTTGAC--ATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCT 176
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || ||||||||| ||||||||||
Sbjct 175 TGCCTGTTAGGGTCTTCACACAGATCTGCAT 145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323998586244000
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