Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq63810 109 4e-19 seq104951 105 4e-18 seq113583 102 5e-17 seq74389 100 2e-16 seq32806 96.9 2e-15 seq2401 96.9 2e-15 >seq63810 Length=35167 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || || | ||| |||| ||| Sbjct 27705 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27764 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | || |||||||| | || | ||||| ||||| Sbjct 27765 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 27824 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 27825 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 27882 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||| ||||||||||| Sbjct 27883 TACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || || | ||| |||| ||| Sbjct 27933 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27992 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | || |||||||| | || | ||||| ||||| Sbjct 27993 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 28052 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 28053 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 28110 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||||||||||||||| Sbjct 28111 TACCGGTCAAGGTCTTCACAAAGATCTGCAT 28141 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || || | ||| |||| ||| Sbjct 27477 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27536 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | || |||||||| | || | ||||| ||||| Sbjct 27537 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 27596 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 27597 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 27654 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||| ||||||||||| Sbjct 27655 TACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||| || | ||| || ||||| ||||| ||||| || Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| ||||||||||| |||||||| || | | |||||||| | || Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 ||||| ||||| ||||| ||||| || || || | |||| || ||| | Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 27408 Query 34933 CATCGACGGTTATGGTTTTTCCCGT-GAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||| | || || ||| |||||||| ||||||||||| Sbjct 27409 CCTCCAGGGTGATGGACTGACCGGTCGAG-GTCTTCACGAAGATCTGCAT 27457 >seq104951 Length=12537 Score = 105 bits (116), Expect = 4e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||| ||||||||||| || || | || |||| ||| Sbjct 11034 ACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCC 11093 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || |||| || || || |||||||| | || | ||||||||||| Sbjct 11094 AGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 11153 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC-AACATCGACGGTTATGGTTTT 34951 || || ||||||| | | || | |||| || ||| | | | || || ||||| || Sbjct 11154 ATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCTT 11213 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||| ||||||||||||| Sbjct 11214 GCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 >seq113583 Length=22641 Score = 102 bits (112), Expect = 5e-17 Identities = 153/212 (72%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAG-GCTTCGTTCATCATC 34831 |||||||| | ||| |||||||| || |||||||| || || ||| | |||| || Sbjct 17442 ACCAAGTGCACGGTGGACTCTTTCTGGATATTATAGTCTGAGAGTGCTGC---CATCCTC 17498 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||| || ||| | || || || ||||| || |||| | ||||||| ||| Sbjct 17499 CAGCTGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTG 17558 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || | |||||| ||||| | | |||| || ||| || |||| || ||||| Sbjct 17559 GATTTGAGCTTTGAC--ATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTC 17616 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || |||||||| ||||||||||| Sbjct 17617 TTGCCCGTCAGGGTCTTCAC-AAGATCTGCAT 17647 >seq74389 Length=16610 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || |||||||| || || | || |||| ||| Sbjct 10475 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 10416 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| |||||||| || || | | |||||| | || | |||||||||| Sbjct 10415 ATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTGG 10356 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || ||| | || | || ||||| | Sbjct 10355 ATTTTAGCTTTGAC--ATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCT 10298 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| | |||||||||||||||||||| Sbjct 10297 TGCCCGTCAAGGTCTTCACAAAGATCTGCAT 10267 >seq32806 Length=18495 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || || ||||| || || | || |||| ||| Sbjct 13610 ACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTCC 13551 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| | |||||| | | || |||||||| | || | |||||||| || Sbjct 13550 AGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTGG 13491 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 | || |||||| || || || | |||| || ||| || |||| || ||||| | Sbjct 13490 GTTTTAGCTTTGAC--ATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCT 13433 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||| ||||| Sbjct 13432 TGCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402 >seq2401 Length=18371 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||| || |||||||| || || | || |||| ||| Sbjct 353 ACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 294 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || || |||||||| | || | |||||||||| Sbjct 293 AGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTGG 234 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 | || |||||| || || || | ||| || | | || || | ||| ||||| | Sbjct 233 AGTTTAGCTTTGAC--ATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCT 176 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||| |||||||||| Sbjct 175 TGCCTGTTAGGGTCTTCACACAGATCTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323998586244000