Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq4308 120 4e-22
seq107838 82.4 1e-10
>seq4308
Length=22571
Score = 120 bits (132), Expect = 4e-22
Identities = 178/251 (71%), Gaps = 1/251 (0%)
Strand=Plus/Minus
Query 2203 GGAA-ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGC 2261
|||| ||||| |||| | || || |||| ||| ||||||| | ||||| ||| ||||
Sbjct 11142 GGAAGACTGAGGAACTTACAAGTTGCCAATTACATGCAACTGTATGAGAATGGGACCTGC 11083
Query 2262 GAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAG 2321
|||||||| |||||||| ||||| ||| |||| |||||| | |||| || | ||| ||
Sbjct 11082 GAGATCCACCTGACCTGCTCTGTGGAGAATCCAAATGACCATGTCTCATTTAGGTGGCAG 11023
Query 2322 GCCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAAC 2381
| || || || | || ||| || | ||| |||| | || || |||||| | ||
Sbjct 11022 GTCTCAGGAAATATACTCCTAGAGGAAGCAAACTTCACAATCTTCTCGGACCCTAAGACT 10963
Query 2382 AGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACG 2441
|||||| |||| ||| ||||| || || || |||| |||||| | || ||| |
Sbjct 10962 TCCAGTGAACAGACCTATTACTGCATAGCTGAGAATCCTGTCAGCAATTTATCCTTCTCT 10903
Query 2442 GTCTCGGCCCA 2452
|||| | |||
Sbjct 10902 TTCTCTGTCCA 10892
>seq107838
Length=23296
Score = 82.4 bits (90), Expect = 1e-10
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1884 CAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTGCCC 1943
||||||| ||| || ||||| ||||||||||||| |||||||| ||||| || |||
Sbjct 21566 CAAACCAACTCAGACCTACTGATGGTGAATGGGGTGCCAGGGGAGTCGGTAACTCTTCCC 21625
Query 1944 CTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986
||||| ||||| || | || || || || ||| ||||||||
Sbjct 21626 CTGGAGTTTCCTGCAGAAGACGAGCTCCAGACCAGCACCTGGC 21668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628020700580000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |