Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq4308 120 4e-22 seq107838 82.4 1e-10 >seq4308 Length=22571 Score = 120 bits (132), Expect = 4e-22 Identities = 178/251 (71%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 2203 GGAA-ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGC 2261 |||| ||||| |||| | || || |||| ||| ||||||| | ||||| ||| |||| Sbjct 11142 GGAAGACTGAGGAACTTACAAGTTGCCAATTACATGCAACTGTATGAGAATGGGACCTGC 11083 Query 2262 GAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAG 2321 |||||||| |||||||| ||||| ||| |||| |||||| | |||| || | ||| || Sbjct 11082 GAGATCCACCTGACCTGCTCTGTGGAGAATCCAAATGACCATGTCTCATTTAGGTGGCAG 11023 Query 2322 GCCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAAC 2381 | || || || | || ||| || | ||| |||| | || || |||||| | || Sbjct 11022 GTCTCAGGAAATATACTCCTAGAGGAAGCAAACTTCACAATCTTCTCGGACCCTAAGACT 10963 Query 2382 AGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACG 2441 |||||| |||| ||| ||||| || || || |||| |||||| | || ||| | Sbjct 10962 TCCAGTGAACAGACCTATTACTGCATAGCTGAGAATCCTGTCAGCAATTTATCCTTCTCT 10903 Query 2442 GTCTCGGCCCA 2452 |||| | ||| Sbjct 10902 TTCTCTGTCCA 10892 >seq107838 Length=23296 Score = 82.4 bits (90), Expect = 1e-10 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1884 CAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTGCCC 1943 ||||||| ||| || ||||| ||||||||||||| |||||||| ||||| || ||| Sbjct 21566 CAAACCAACTCAGACCTACTGATGGTGAATGGGGTGCCAGGGGAGTCGGTAACTCTTCCC 21625 Query 1944 CTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986 ||||| ||||| || | || || || || ||| |||||||| Sbjct 21626 CTGGAGTTTCCTGCAGAAGACGAGCTCCAGACCAGCACCTGGC 21668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020700580000