Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq75256 143 2e-29
seq65576 100 2e-16
seq112790 87.8 1e-12
>seq75256
Length=16458
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| ||||| || ||||||||||||||||| || ||
Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
||||| || |||||||| | |||||||| || ||||| || || ||||| |||| |
Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | || ||||||||||| || ||||||||
Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAG 6537
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217
|||| ||||| || |||||||||||||| || || || || || || | || || ||||
Sbjct 9830 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 9889
Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277
| |||| ||| ||| |||||| ||||| | ||| |||||||| ||||||||
Sbjct 9890 CTCTGTTGGAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATTC 9949
Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
| || ||||| || || ||||| | |||||||| ||
Sbjct 9950 TCACTCCCTTGGATGACAGTTCTTTAGCATTTGTGGATCC 9989
>seq65576
Length=5110
Score = 100 bits (110), Expect = 2e-16
Identities = 229/343 (67%), Gaps = 5/343 (1%)
Strand=Plus/Plus
Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850
|||||| | ||||| || || | || |||||| | ||| || |||| || |||||
Sbjct 1775 AGCTGAATTTTCAGTGGCTCAGTGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGT 1834
Query 29851 ACAAACTCT---CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 29907
| ||| | || || | || | |||| | | || |||||||| ||||| || |||
Sbjct 1835 ATAAAGTTATTACCTGGCTTCAGATCCGTGATGAGTGCAATCATGTAGGTGAGCAGGGAG 1894
Query 29908 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG- 29966
|||||||| ||||| || || || | || || || || | ||| ||| | || | ||
Sbjct 1895 TAGCTGGCAATGTTGAATGGCACACATAGGCCTATATCTGCTGACGTCTAGAAGGGTTGC 1954
Query 29967 -ACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAG 30025
|| | ||||| || ||| || | ||| || | || ||||| | ||||||
Sbjct 1955 TTTACAACAGCTCATTGTTCTCCACATAGAGCTGGCAAAGGGCATGGCATGAAGGAAGGT 2014
Query 30026 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30085
||||||| | || || || ||||| | ||||| |||||| | || | || ||||
Sbjct 2015 CCATGAGAGGAAGATCGTTTGGATTCCAAGTGCACAGGATGATTCTTCTAACGTCAGGGT 2074
Query 30086 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30128
||||| |||| | ||| | |||||||| || || || ||
Sbjct 2075 TGTTCTTGATAATGTCAGTAACCTTTTGCAGTTGGTCTACTCC 2117
>seq112790
Length=25949
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 112114 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 112173
||||| |||| || ||||||| | | ||||| |||||| || || |||||||||||
Sbjct 23665 CTGAGAACTAAATTAATCCTGTTCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAG 23724
Query 112174 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||| |||||||| ||||||| |||||||| |||
Sbjct 23725 GTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 23760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 407818305666500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |