Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq75256 143 2e-29 seq65576 100 2e-16 seq112790 87.8 1e-12 >seq75256 Length=16458 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| || || Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || |||||||| | |||||||| || ||||| || || ||||| |||| | Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||||||||| || |||||||| Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAG 6537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| ||||| || |||||||||||||| || || || || || || | || || |||| Sbjct 9830 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 9889 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | |||| ||| ||| |||||| ||||| | ||| |||||||| |||||||| Sbjct 9890 CTCTGTTGGAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATTC 9949 Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | || ||||| || || ||||| | |||||||| || Sbjct 9950 TCACTCCCTTGGATGACAGTTCTTTAGCATTTGTGGATCC 9989 >seq65576 Length=5110 Score = 100 bits (110), Expect = 2e-16 Identities = 229/343 (67%), Gaps = 5/343 (1%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 |||||| | ||||| || || | || |||||| | ||| || |||| || ||||| Sbjct 1775 AGCTGAATTTTCAGTGGCTCAGTGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGT 1834 Query 29851 ACAAACTCT---CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 29907 | ||| | || || | || | |||| | | || |||||||| ||||| || ||| Sbjct 1835 ATAAAGTTATTACCTGGCTTCAGATCCGTGATGAGTGCAATCATGTAGGTGAGCAGGGAG 1894 Query 29908 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG- 29966 |||||||| ||||| || || || | || || || || | ||| ||| | || | || Sbjct 1895 TAGCTGGCAATGTTGAATGGCACACATAGGCCTATATCTGCTGACGTCTAGAAGGGTTGC 1954 Query 29967 -ACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAG 30025 || | ||||| || ||| || | ||| || | || ||||| | |||||| Sbjct 1955 TTTACAACAGCTCATTGTTCTCCACATAGAGCTGGCAAAGGGCATGGCATGAAGGAAGGT 2014 Query 30026 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30085 ||||||| | || || || ||||| | ||||| |||||| | || | || |||| Sbjct 2015 CCATGAGAGGAAGATCGTTTGGATTCCAAGTGCACAGGATGATTCTTCTAACGTCAGGGT 2074 Query 30086 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30128 ||||| |||| | ||| | |||||||| || || || || Sbjct 2075 TGTTCTTGATAATGTCAGTAACCTTTTGCAGTTGGTCTACTCC 2117 >seq112790 Length=25949 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 112114 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 112173 ||||| |||| || ||||||| | | ||||| |||||| || || ||||||||||| Sbjct 23665 CTGAGAACTAAATTAATCCTGTTCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAG 23724 Query 112174 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| |||||||| ||||||| |||||||| ||| Sbjct 23725 GTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 23760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407818305666500