Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq27377 176 8e-39 seq15107 96.9 6e-15 seq124007 93.3 8e-14 seq14349 93.3 8e-14 >seq27377 Length=15559 Score = 176 bits (194), Expect = 8e-39 Identities = 187/245 (76%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| ||||||||| || ||||||| Sbjct 679 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGAGCCACCT 622 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | | || || |||| || |||||||| || | |||||| ||||| Sbjct 621 GCTCCCGGAGGAGGCCGGCAGTGCTGGAGAGCCCTGCGTTCTCCGCCTTGAGTGTCTTCA 562 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 561 CCTTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 502 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| | Sbjct 501 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 442 Query 241623 GAGAC 241627 | ||| Sbjct 441 GGGAC 437 >seq15107 Length=6788 Score = 96.9 bits (106), Expect = 6e-15 Identities = 127/174 (73%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC--- 241471 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || |||| Sbjct 471 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGT---GGACGCC 415 Query 241472 -AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 | ||| | ||| | ||||||| ||||||||||||||| || || | |||||| || Sbjct 414 AACTCC-GAGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGTGAGATGCGCTC 356 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACG 241584 ||| |||||| |||||| |||| || || | |||||| || || | ||| || Sbjct 355 CAGCTTGCGCTTGCGGCACTTGGAAGCAGCTATGCGGTTTCGCAGCCGCTTGCG 302 >seq124007 Length=20016 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||| ||||| | || || |||||||| ||||||||| ||| || ||||||||||| || Sbjct 15499 TGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 15440 Query 213587 GTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645 | ||| ||| || | || ||||| |||||||||||||| |||| || |||||| || Sbjct 15439 G-TTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCT 15381 Query 213646 GGGAC 213650 | ||| Sbjct 15380 GCGAC 15376 >seq14349 Length=19900 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 2711 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2652 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 2651 GCGATGCGGTTCCTCATGCGCTTTCTCTCCGCCTTGATTCGCTCCTGGGACTCCATGTCG 2592 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 2591 ATGGGTGAC 2583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929663912320000