Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq27377 176 8e-39
seq15107 96.9 6e-15
seq124007 93.3 8e-14
seq14349 93.3 8e-14
>seq27377
Length=15559
Score = 176 bits (194), Expect = 8e-39
Identities = 187/245 (76%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442
||| |||| ||||| | || ||||| | || ||||| ||||||||| || |||||||
Sbjct 679 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGAGCCACCT 622
Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502
| ||||| || | | || || |||| || |||||||| || | |||||| |||||
Sbjct 621 GCTCCCGGAGGAGGCCGGCAGTGCTGGAGAGCCCTGCGTTCTCCGCCTTGAGTGTCTTCA 562
Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562
| || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 561 CCTTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 502
Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622
|||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| |
Sbjct 501 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 442
Query 241623 GAGAC 241627
| |||
Sbjct 441 GGGAC 437
>seq15107
Length=6788
Score = 96.9 bits (106), Expect = 6e-15
Identities = 127/174 (73%), Gaps = 8/174 (5%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC--- 241471
||||||| ||| ||||| || |||||||| || ||||| | | ||| || ||||
Sbjct 471 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGT---GGACGCC 415
Query 241472 -AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530
| ||| | ||| | ||||||| ||||||||||||||| || || | |||||| ||
Sbjct 414 AACTCC-GAGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGTGAGATGCGCTC 356
Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACG 241584
||| |||||| |||||| |||| || || | |||||| || || | ||| ||
Sbjct 355 CAGCTTGCGCTTGCGGCACTTGGAAGCAGCTATGCGGTTTCGCAGCCGCTTGCG 302
>seq124007
Length=20016
Score = 93.3 bits (102), Expect = 8e-14
Identities = 97/125 (78%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586
||| ||||| | || || |||||||| ||||||||| ||| || ||||||||||| ||
Sbjct 15499 TGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 15440
Query 213587 GTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645
| ||| ||| || | || ||||| |||||||||||||| |||| || |||||| ||
Sbjct 15439 G-TTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCT 15381
Query 213646 GGGAC 213650
| |||
Sbjct 15380 GCGAC 15376
>seq14349
Length=19900
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 2711 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2652
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 2651 GCGATGCGGTTCCTCATGCGCTTTCTCTCCGCCTTGATTCGCTCCTGGGACTCCATGTCG 2592
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 2591 ATGGGTGAC 2583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 929663912320000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |