Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq69878 316 2e-81
seq28486 156 5e-33
seq88312 111 2e-19
>seq69878
Length=27291
Score = 316 bits (350), Expect = 2e-81
Identities = 665/985 (68%), Gaps = 11/985 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|| ||| || |||| ||| |||| ||| || | ||| | ||| ||| || ||||| ||
Sbjct 4952 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATATCTGTGTCAAACTTATTAGC 5011
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| || | | ||||||| || ||| || | || || || || ||
Sbjct 5012 AAACAAGTGGTGC---TTGCGCAACATCCAGTTCAAGTCACCTGCTCCAAAAACACACAC 5068
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| |||| ||| || || |||| |||||||| | || || || | || ||||||||
Sbjct 5069 GGAGCGTACGTGGACACCACTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCACCTTC 5128
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| |||||||| || || || ||||||||||| |||| || || |
Sbjct 5129 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGGACATGTCATACTTATG 5188
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| |||| | | || || || | || || | ||| | |||||||| || | ||
Sbjct 5189 GCTTAGGGACAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 5248
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||| ||||| || | ||| ||||| |||| | |||| | | ||
Sbjct 5249 ATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 5308
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | || || || | || ||||| || || ||||| || || | ||| |
Sbjct 5309 CACATACTCCACATAATTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTGT 5368
Query 160472 GGGTATAGGCGGCGTGTC-TTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530
| ||| ||| ||| |||||| || ||||| | || ||| || || | |
Sbjct 5369 TTCAAGAGGAGGC-TGTAATTTGTCTGTCCCTGTGTTTGTCAGTTTTCCATTAACAATGG 5427
Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
| |||| |||||||| | | || | | |||||| || || ||||| |||
Sbjct 5428 TATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCTAGGTTGT 5487
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| | |||| | ||| || ||| | |||| || || ||||| || || | ||||| |
Sbjct 5488 TTTCTCCGTTTAACGACTTGAGCGTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 5547
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710
| |||| || | ||||||| ||||||||| | || |||| || |||||| ||
Sbjct 5548 CCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCGGTAGAGGTCCTGCA 5607
Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770
| || || | ||| ||||| || || ||||| || || ||||| || |||| || ||
Sbjct 5608 TACAGTTGAGATCCGCCTGAACCCGACTCCACGATGCATACACGACAGTCTCCAGCCGAC 5667
Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827
||||||||||||||||| |||||| || | || || |||| | |||| |||| | |
Sbjct 5668 TGGCCACAAAGACGTTACTGAAACAGGATGCAATGCCAATCACCGCAGCCAAAAAGGA-A 5726
Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887
|| || | ||| |||||| || | |||||| | ||||||||| |||||||||||
Sbjct 5727 TC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCC 5784
Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947
| | | ||| || | ||| || || || ||||| | ||| || || || ||||| ||||
Sbjct 5785 TCAAGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCTATTGGAA 5844
Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007
||| ||| || ||| |||| | | ||||| ||| ||||||| ||| ||
Sbjct 5845 ACTTTTCCTCTTCTTTACTAAGGGGTTCTACAATATACTTGCGCTTCTTGATGAAAGAAG 5904
Query 161008 CACAATCCCGCGTCATGTTGATATA 161032
|||||| | |||||||| |||||
Sbjct 5905 TACAATCACTAGTCATGTTTATATA 5929
>seq28486
Length=29240
Score = 156 bits (172), Expect = 5e-33
Identities = 226/319 (71%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 168151 ATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACA 168210
||||||| | ||| | |||||| | | || || || || || || |||||||||||
Sbjct 19372 ATAGAGTGAGGCAGGCTTTTCCTAAGACATTCCCAGAACCAAAGGTATTGAAGAGGCATT 19431
Query 168211 TGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGC 168270
| | || || || ||||||| |||||||||||| || || | |||||||| |||| |
Sbjct 19432 GGTAACATCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAGTC 19491
Query 168271 CCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCT 168330
||| || || ||||| | || ||||| | || || || ||||| || ||| ||
Sbjct 19492 CCAGCTCAGTGATGTTTATCTTGTCCTTATAGGCTGGCTGGACCACAACACCATGGGACT 19551
Query 168331 CGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCA 168390
|||||||||| ||||||| || ||||| | ||||| || |||||||| || || | ||
Sbjct 19552 TGCTGAAGGTGACCATGTTTTCTGGGCTAGCAGCCTTGATTTTCTGCCATGTCACAACCA 19611
Query 168391 GAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTC 168450
|| || | || ||| || |||| | ||||| || ||||||||||| | |
Sbjct 19612 AGACTTCCTGGGAAGTTCCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTTTT 19671
Query 168451 GCTCATCTTGAGTTACGAC 168469
||||||||||| || ||
Sbjct 19672 TTTCATCTTGAGTCACCAC 19690
>seq88312
Length=19599
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| ||| |||| |||| || |||| |||||| | |||||| || |||| | || |
Sbjct 3329 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCAACATGAATGAATGAATCTGCT 3270
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || |||||||| |||| ||| || || || | ||| | ||||| | | ||
Sbjct 3269 GGAATATAATTTTCATAGTTTTCTCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 3210
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | ||||| |||||||| |||||| || |||| |||||||||||||| |
Sbjct 3209 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 3150
Query 176412 AAATAGAACTTACA 176425
| ||| || || ||
Sbjct 3149 AGATAAAATTTGCA 3136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576061153980000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |