Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq69878 316 2e-81 seq28486 156 5e-33 seq88312 111 2e-19 >seq69878 Length=27291 Score = 316 bits (350), Expect = 2e-81 Identities = 665/985 (68%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 || ||| || |||| ||| |||| ||| || | ||| | ||| ||| || ||||| || Sbjct 4952 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATATCTGTGTCAAACTTATTAGC 5011 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | | ||||||| || ||| || | || || || || || Sbjct 5012 AAACAAGTGGTGC---TTGCGCAACATCCAGTTCAAGTCACCTGCTCCAAAAACACACAC 5068 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| |||| ||| || || |||| |||||||| | || || || | || |||||||| Sbjct 5069 GGAGCGTACGTGGACACCACTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCACCTTC 5128 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || || || ||||||||||| |||| || || | Sbjct 5129 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGGACATGTCATACTTATG 5188 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | |||| | | || || || | || || | ||| | |||||||| || | || Sbjct 5189 GCTTAGGGACAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 5248 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| | |||| | | || Sbjct 5249 ATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 5308 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || ||||| || || ||||| || || | ||| | Sbjct 5309 CACATACTCCACATAATTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTGT 5368 Query 160472 GGGTATAGGCGGCGTGTC-TTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| ||| ||| |||||| || ||||| | || ||| || || | | Sbjct 5369 TTCAAGAGGAGGC-TGTAATTTGTCTGTCCCTGTGTTTGTCAGTTTTCCATTAACAATGG 5427 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | |||| |||||||| | | || | | |||||| || || ||||| ||| Sbjct 5428 TATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCTAGGTTGT 5487 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | |||| | ||| || ||| | |||| || || ||||| || || | ||||| | Sbjct 5488 TTTCTCCGTTTAACGACTTGAGCGTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 5547 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | |||| || | ||||||| ||||||||| | || |||| || |||||| || Sbjct 5548 CCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCGGTAGAGGTCCTGCA 5607 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 | || || | ||| ||||| || || ||||| || || ||||| || |||| || || Sbjct 5608 TACAGTTGAGATCCGCCTGAACCCGACTCCACGATGCATACACGACAGTCTCCAGCCGAC 5667 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827 ||||||||||||||||| |||||| || | || || |||| | |||| |||| | | Sbjct 5668 TGGCCACAAAGACGTTACTGAAACAGGATGCAATGCCAATCACCGCAGCCAAAAAGGA-A 5726 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | ||| |||||| || | |||||| | ||||||||| ||||||||||| Sbjct 5727 TC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCC 5784 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | | | ||| || | ||| || || || ||||| | ||| || || || ||||| |||| Sbjct 5785 TCAAGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCTATTGGAA 5844 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 ||| ||| || ||| |||| | | ||||| ||| ||||||| ||| || Sbjct 5845 ACTTTTCCTCTTCTTTACTAAGGGGTTCTACAATATACTTGCGCTTCTTGATGAAAGAAG 5904 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| ||||| Sbjct 5905 TACAATCACTAGTCATGTTTATATA 5929 >seq28486 Length=29240 Score = 156 bits (172), Expect = 5e-33 Identities = 226/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 168151 ATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACA 168210 ||||||| | ||| | |||||| | | || || || || || || ||||||||||| Sbjct 19372 ATAGAGTGAGGCAGGCTTTTCCTAAGACATTCCCAGAACCAAAGGTATTGAAGAGGCATT 19431 Query 168211 TGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGC 168270 | | || || || ||||||| |||||||||||| || || | |||||||| |||| | Sbjct 19432 GGTAACATCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAGTC 19491 Query 168271 CCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCT 168330 ||| || || ||||| | || ||||| | || || || ||||| || ||| || Sbjct 19492 CCAGCTCAGTGATGTTTATCTTGTCCTTATAGGCTGGCTGGACCACAACACCATGGGACT 19551 Query 168331 CGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCA 168390 |||||||||| ||||||| || ||||| | ||||| || |||||||| || || | || Sbjct 19552 TGCTGAAGGTGACCATGTTTTCTGGGCTAGCAGCCTTGATTTTCTGCCATGTCACAACCA 19611 Query 168391 GAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTC 168450 || || | || ||| || |||| | ||||| || ||||||||||| | | Sbjct 19612 AGACTTCCTGGGAAGTTCCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTTTT 19671 Query 168451 GCTCATCTTGAGTTACGAC 168469 ||||||||||| || || Sbjct 19672 TTTCATCTTGAGTCACCAC 19690 >seq88312 Length=19599 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | |||||| || |||| | || | Sbjct 3329 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCAACATGAATGAATGAATCTGCT 3270 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| ||| || || || | ||| | ||||| | | || Sbjct 3269 GGAATATAATTTTCATAGTTTTCTCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 3210 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||| | Sbjct 3209 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 3150 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 3149 AGATAAAATTTGCA 3136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576061153980000