Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq12448 102 1e-16 seq90327 95.1 2e-14 seq5492 89.7 9e-13 >seq12448 Length=17785 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | ||| || |||| |||||| ||||||||||| Sbjct 3387 ATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTT 3446 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| ||||| |||| || ||||| || | ||||| || || || || Sbjct 3447 ATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGAT 3506 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| || || || ||||| || Sbjct 3507 GGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3545 >seq90327 Length=63722 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 193154 CAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAA 193213 |||||| | || | ||| || |||| || ||||| || || || | ||| || | Sbjct 54691 CAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAG 54632 Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||| || || ||||| | | ||| || ||||||||||| |||||||| ||||| || || Sbjct 54631 TTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 54572 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 |||| ||||| |||| | ||||| || | ||||| || ||||| || || || || Sbjct 54571 CTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCC 54512 Query 193334 TGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | |||| | || || ||||| || Sbjct 54511 GGTATGGGTTTCCATGAAAATCTGCATCTT 54482 >seq5492 Length=9153 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 3810 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCACCCATCTTCC 3751 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 3750 CGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 3691 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| | ||||| | | ||||| || || || || || || Sbjct 3690 ATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTGATGGTCTTC 3631 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || ||||| || Sbjct 3630 CCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897849468360000