Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq12448 102 1e-16
seq90327 95.1 2e-14
seq5492 89.7 9e-13
>seq12448
Length=17785
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| || || ||||| || | ||| || |||| |||||| |||||||||||
Sbjct 3387 ATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTT 3446
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||| || || |||| ||||| |||| || ||||| || | ||||| || || || ||
Sbjct 3447 ATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGAT 3506
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || || || ||||| || || || ||||| ||
Sbjct 3507 GGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3545
>seq90327
Length=63722
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 193154 CAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAA 193213
|||||| | || | ||| || |||| || ||||| || || || | ||| || |
Sbjct 54691 CAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAG 54632
Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273
||| || || ||||| | | ||| || ||||||||||| |||||||| ||||| || ||
Sbjct 54631 TTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 54572
Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333
|||| ||||| |||| | ||||| || | ||||| || ||||| || || || ||
Sbjct 54571 CTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCC 54512
Query 193334 TGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| | |||| | || || ||||| ||
Sbjct 54511 GGTATGGGTTTCCATGAAAATCTGCATCTT 54482
>seq5492
Length=9153
Score = 89.7 bits (98), Expect = 9e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | || | ||| || ||| || ||||| || || || | ||| ||
Sbjct 3810 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCACCCATCTTCC 3751
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| ||
Sbjct 3750 CGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 3691
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| | ||||| | | ||||| || || || || || ||
Sbjct 3690 ATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTGATGGTCTTC 3631
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || ||||| || || || ||||| ||
Sbjct 3630 CCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897849468360000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |