Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq33159 118 2e-21 seq12448 109 1e-18 seq5492 105 1e-17 seq57509 100 6e-16 seq157463 95.1 2e-14 seq66463 84.2 4e-11 >seq33159 Length=15523 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 2091 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 2149 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || | | |||| |||| ||| || ||||||||||| | ||| | ||||||| | Sbjct 2150 ACACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAG 2209 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||| |||| ||||| ||||| || |||||||| ||| | |||||| | ||| | Sbjct 2210 GAATTTCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAA 2269 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || ||||| | ||||| | ||| |||||||| || Sbjct 2270 CCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCATCTT 2321 >seq12448 Length=17785 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| | || | | |||| |||| ||| || || |||||||| | ||| Sbjct 3361 ATGTTTTAGTCAGACACAGTGCATCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTT 3420 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||| ||| || |||||||||||||| || || || ||||||||| ||| | | Sbjct 3421 TGCTGATTAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTA 3480 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || || || ||||| || ||||| | ||||| | || |||||| Sbjct 3481 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGC 3540 Query 192535 ATTTT 192539 || || Sbjct 3541 ATCTT 3545 >seq5492 Length=9153 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 3829 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 3771 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | |||| ||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 3770 ACAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 3711 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| | | | ||| | | ||| | Sbjct 3710 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAA 3651 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || ||||| | ||||| | || |||||||| || Sbjct 3650 CCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599 >seq57509 Length=13326 Score = 100 bits (110), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||| ||||| | ||||| | ||| | ||||| ||||||| || || || ||| | Sbjct 2319 ACCACTACTAAGTCTCAATACAAGATGAAGAGTAGACTCTTTATGAATGTTGTAGTCAAA 2378 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || | | |||| ||| || || ||||||||||| | ||| | |||||||| | Sbjct 2379 ----GTACATCCATCTTCCGGTTACTTGCCAGCAAAGATCAGTCTTCGCTGATCAGGAAG 2434 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || | ||||||||| | | | ||| || | ||| || Sbjct 2435 AATTCCTTCCTTATCCTGGATCCTGGCCTTTACATTATCTGTTGTATCCGAGGGTTCAAC 2494 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||||| ||||| || ||||| | ||||| || || | |||||| || Sbjct 2495 CTTGAGAGTGATGGTCTTCCCAGTAAGGGTTTTGATGAAAAGCTGCATCTT 2545 >seq157463 Length=7943 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 192305 TAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAAT 192364 ||| |||||| | ||| | || || | ||| | ||| | |||||| || || || | Sbjct 329 TAACACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGT 388 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 | || || || ||| |||| |||| || || ||||||||||| ||| || ||| ||| Sbjct 389 CTGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAG 448 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 | || |||||||| ||||| || | || |||| ||| ||| | | | || | || Sbjct 449 GAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTT 508 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || ||||| ||||| || ||||| | |||| | || | |||||| || Sbjct 509 CAACCTCAAGAGTGATGGTCTTCCCAGTAAGGATTTTCACGAAAAGCTGCATCTT 563 >seq66463 Length=18175 Score = 84.2 bits (92), Expect = 4e-11 Identities = 120/168 (71%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| || | |||| ||| || ||||||||| | | || || ||| |||| || Sbjct 9794 AAAGTACGTCCACCTTCCAGTTGCTTGCCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGA 9735 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||||||||| | || || |||||||| ||| | ||| | | ||| | Sbjct 9734 ATTCCTTCTTTATCCCGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAGCC 9675 Query 192490 TCTAGAGTAATGGTT-TTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||| || ||||| | ||||| | || |||||||| Sbjct 9674 TCCAGAGTGATGGTTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 9627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982455509175000