Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq33159 118 2e-21
seq12448 109 1e-18
seq5492 105 1e-17
seq57509 100 6e-16
seq157463 95.1 2e-14
seq66463 84.2 4e-11
>seq33159
Length=15523
Score = 118 bits (130), Expect = 2e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||| | ||| ||| || || || || ||||
Sbjct 2091 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 2149
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | || | | |||| |||| ||| || ||||||||||| | ||| | ||||||| |
Sbjct 2150 ACACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAG 2209
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| ||| |||| ||||| ||||| || |||||||| ||| | |||||| | ||| |
Sbjct 2210 GAATTTCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAA 2269
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || ||||| | ||||| | ||| |||||||| ||
Sbjct 2270 CCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCATCTT 2321
>seq12448
Length=17785
Score = 109 bits (120), Expect = 1e-18
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || || ||||| | || | | |||| |||| ||| || || |||||||| | |||
Sbjct 3361 ATGTTTTAGTCAGACACAGTGCATCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTT 3420
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| |||| ||| || |||||||||||||| || || || ||||||||| ||| | |
Sbjct 3421 TGCTGATTAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTA 3480
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || | ||| || || || || ||||| || ||||| | ||||| | || ||||||
Sbjct 3481 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGC 3540
Query 192535 ATTTT 192539
|| ||
Sbjct 3541 ATCTT 3545
>seq5492
Length=9153
Score = 105 bits (116), Expect = 1e-17
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||| | ||| ||| || || || || ||||
Sbjct 3829 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 3771
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || | |||| ||| ||| || ||||||||||| | ||| || |||||||| |
Sbjct 3770 ACAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 3711
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| | | | ||| | | ||| |
Sbjct 3710 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAA 3651
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || ||||| | ||||| | || |||||||| ||
Sbjct 3650 CCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599
>seq57509
Length=13326
Score = 100 bits (110), Expect = 6e-16
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||| ||||| | ||||| | ||| | ||||| ||||||| || || || ||| |
Sbjct 2319 ACCACTACTAAGTCTCAATACAAGATGAAGAGTAGACTCTTTATGAATGTTGTAGTCAAA 2378
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| | | |||| ||| || || ||||||||||| | ||| | |||||||| |
Sbjct 2379 ----GTACATCCATCTTCCGGTTACTTGCCAGCAAAGATCAGTCTTCGCTGATCAGGAAG 2434
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || | ||||||||| | | | ||| || | ||| ||
Sbjct 2435 AATTCCTTCCTTATCCTGGATCCTGGCCTTTACATTATCTGTTGTATCCGAGGGTTCAAC 2494
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| ||||| ||||| || ||||| | ||||| || || | |||||| ||
Sbjct 2495 CTTGAGAGTGATGGTCTTCCCAGTAAGGGTTTTGATGAAAAGCTGCATCTT 2545
>seq157463
Length=7943
Score = 95.1 bits (104), Expect = 2e-14
Identities = 162/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 192305 TAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAAT 192364
||| |||||| | ||| | || || | ||| | ||| | |||||| || || || |
Sbjct 329 TAACACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGT 388
Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424
| || || || ||| |||| |||| || || ||||||||||| ||| || ||| |||
Sbjct 389 CTGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAG 448
Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484
| || |||||||| ||||| || | || |||| ||| ||| | | | || | ||
Sbjct 449 GAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTT 508
Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || ||||| ||||| || ||||| | |||| | || | |||||| ||
Sbjct 509 CAACCTCAAGAGTGATGGTCTTCCCAGTAAGGATTTTCACGAAAAGCTGCATCTT 563
>seq66463
Length=18175
Score = 84.2 bits (92), Expect = 4e-11
Identities = 120/168 (71%), Gaps = 1/168 (1%)
Strand=Plus/Minus
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
|| || ||| || | |||| ||| || ||||||||| | | || || ||| |||| ||
Sbjct 9794 AAAGTACGTCCACCTTCCAGTTGCTTGCCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGA 9735
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|||||||||||||| | || || |||||||| ||| | ||| | | ||| |
Sbjct 9734 ATTCCTTCTTTATCCCGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAGCC 9675
Query 192490 TCTAGAGTAATGGTT-TTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| ||||| |||||| || ||||| | ||||| | || ||||||||
Sbjct 9674 TCCAGAGTGATGGTTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 9627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982455509175000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |