Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq12448 104 4e-17
seq66463 84.2 4e-11
>seq12448
Length=17785
Score = 104 bits (114), Expect = 4e-17
Identities = 167/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || | |||| | ||||| || || | ||| | || | ||| | ||| ||
Sbjct 3306 TTTCTTAGCATCACCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTT 3365
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || | || | | | || |||| ||| || || ||||| || | ||| || ||
Sbjct 3366 TTAGTCAGACACAGTGCATCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTG 3425
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
| ||| || |||||||||||||| || || || ||||||||| ||| ||||| ||
Sbjct 3426 ATTAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGA 3485
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || || || ||||| || ||||| | ||||| | ||| |||||||| ||
Sbjct 3486 GGGTTCAACCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3545
>seq66463
Length=18175
Score = 84.2 bits (92), Expect = 4e-11
Identities = 140/201 (70%), Gaps = 5/201 (2%)
Strand=Plus/Minus
Query 171870 AAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTA 171929
||||| | ||| || | ||| || ||| | |||| ||| | | |||| ||| ||
Sbjct 9823 AAAGTGGACTCCTTTGGAATGTTGTAACC----AAAGTACGTCCACCTTCCAGTTGCTTG 9768
Query 171930 CCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 171989
|||||||| | | || || || |||| || |||||||||||||| | || ||
Sbjct 9767 CCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGAATTCCTTCTTTATCCCGGATCTTGGCC 9708
Query 171990 TTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT-TTACCAGTTAA 172048
|||||||| ||| ||||| | | ||| | || ||||| |||||| || ||||| |
Sbjct 9707 TTTACATTTTCTATTGTATCCAAGGGTTCAGCCTCCAGAGTGATGGTTCTTCCCAGTAAG 9648
Query 172049 TGTTTTAATGAATATCTGCAT 172069
||||| | ||| ||||||||
Sbjct 9647 GGTTTTCACGAAAATCTGCAT 9627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903320070900000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |