Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12448 104 4e-17 seq66463 84.2 4e-11 >seq12448 Length=17785 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| || || | ||| | || | ||| | ||| || Sbjct 3306 TTTCTTAGCATCACCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTT 3365 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || | || | | | || |||| ||| || || ||||| || | ||| || || Sbjct 3366 TTAGTCAGACACAGTGCATCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTG 3425 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 | ||| || |||||||||||||| || || || ||||||||| ||| ||||| || Sbjct 3426 ATTAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGA 3485 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || ||||| | ||||| | ||| |||||||| || Sbjct 3486 GGGTTCAACCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3545 >seq66463 Length=18175 Score = 84.2 bits (92), Expect = 4e-11 Identities = 140/201 (70%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 171870 AAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTA 171929 ||||| | ||| || | ||| || ||| | |||| ||| | | |||| ||| || Sbjct 9823 AAAGTGGACTCCTTTGGAATGTTGTAACC----AAAGTACGTCCACCTTCCAGTTGCTTG 9768 Query 171930 CCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 171989 |||||||| | | || || || |||| || |||||||||||||| | || || Sbjct 9767 CCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGAATTCCTTCTTTATCCCGGATCTTGGCC 9708 Query 171990 TTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT-TTACCAGTTAA 172048 |||||||| ||| ||||| | | ||| | || ||||| |||||| || ||||| | Sbjct 9707 TTTACATTTTCTATTGTATCCAAGGGTTCAGCCTCCAGAGTGATGGTTCTTCCCAGTAAG 9648 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| Sbjct 9647 GGTTTTCACGAAAATCTGCAT 9627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903320070900000