Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq10813 161 1e-33 seq135659 158 1e-32 seq83376 158 1e-32 seq80301 158 1e-32 seq79723 158 1e-32 seq77571 149 8e-30 seq76101 122 1e-21 seq72956 122 1e-21 seq80303 111 2e-18 seq122114 102 1e-15 seq46369 95.1 1e-13 seq52178 86.0 8e-11 >seq10813 Length=5319 Score = 161 bits (178), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 455 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 396 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 395 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATGCGTTCGAAGA 336 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 335 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 276 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 275 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 239 Score = 152 bits (168), Expect = 6e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 4599 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 4658 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||| ||||||| |||| | Sbjct 4659 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCCCCCGCGATGCGTTCGAAGA 4718 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 4719 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 4778 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 4779 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 4815 >seq135659 Length=1531 Score = 158 bits (174), Expect = 1e-32 Identities = 168/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 1480 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 1421 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCG-GCCTCGGTGC-CGATGCGGTCGAT 1254460 | || ||||||||| | |||||||| |||| |||||| | ||||||| |||| Sbjct 1420 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGCGACGCCTCGCCCCGCGATGCGTTCGAA 1361 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 ||||||||||| ||||||||||||| ||| | |||| ||||||||| ||| || Sbjct 1360 GATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGG 1301 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||||| ||||||||||| | | || |||||| Sbjct 1300 GTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 1262 >seq83376 Length=7469 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 727 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 668 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 667 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGTTCGAAGA 608 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 607 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 548 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 547 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 511 >seq80301 Length=5813 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 2330 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2271 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 2270 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGTTCGAAGA 2211 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 2210 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 2151 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 2150 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2114 >seq79723 Length=27194 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 15062 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 15003 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 15002 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGTTCGAAGA 14943 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 14942 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 14883 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 14882 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 14846 >seq77571 Length=13609 Score = 149 bits (164), Expect = 8e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 676 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 617 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||| ||||||| |||| | Sbjct 616 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCCCCCGCGATGCGTTCGAAGA 557 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| | ||||||| ||| |||| Sbjct 556 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGGGATGCCCGTGTCCGGGT 497 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 496 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 460 >seq76101 Length=7649 Score = 122 bits (134), Expect = 1e-21 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||||| ||| | || ||||||||| |||||||||||||| | | || Sbjct 1483 GCTTGGCCAACTCGCCCGGCAGCAGCAAGCGCACGGCTGTCTGGATCTCGCGAGAGGTGA 1424 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||||||| ||||| | || || |||| | Sbjct 1423 TAGTAGAGCGCTTGTTATAATGCGCCAGACGGGACGCCTCACCAGCAATACGTTCGAAAA 1364 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||||||||||||||||| ||| | ||| |||||||| || || | Sbjct 1363 TGTCATTGACAAACGAGTTCATGATGCCCATAGCTTTGGACGAGATGCCAGTATCCGGAT 1304 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||| ||||| Sbjct 1303 GAACCTGCTTCAGCACTTTGTA 1282 >seq72956 Length=13412 Score = 122 bits (134), Expect = 1e-21 Identities = 149/202 (74%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | |||||||||||| |||| | |||||| | || Sbjct 4421 GCTTGGCCAACTCCCCGAGCAGCAGCAGGCGCACGGCCATCTGCACCTCGCGGGACGTGA 4480 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| |||||| || |||| | || | | Sbjct 4481 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGAAGCCTCGCTGGGGATGTGCTCAAAGA 4540 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| | ||||||||||| ||| | ||| |||||||| ||| |||| Sbjct 4541 TGTCGTTGACCAGCGAGTTCATGATGCCCATTGCCTTCGATGAGATGCCTGTGTCTGGGT 4600 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 ||||||||| ||||||||||| Sbjct 4601 -CACCTGCTTCAGCACCTTGTA 4621 Score = 105 bits (116), Expect = 8e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || ||| | ||||| |||||| ||| | |||||| || || Sbjct 1419 GCTTGGCCAGTTCCCCCGGCAGCAGCAGGCCCACGGCCACCTGCACCTCGCGGATGT-GA 1361 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| || ||| ||| || | | Sbjct 1360 TGGTCCAGCGCTTGTTGTAATGCGCCAGGCGGGGAGCCTCGCTGGCGACGCGCTCAACGA 1301 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | | ||||| || |||||||||| ||| | ||| |||||||| |||||| | Sbjct 1300 TATTGTTGAATAATGAGTTCATGATGCCCATGGCCTTCGATGAGATGCCTCTGTCGGG-T 1242 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||| ||||||| Sbjct 1241 GCACCTGCTTCAGCTCCTTGTA 1220 >seq80303 Length=5398 Score = 111 bits (122), Expect = 2e-18 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 1254383 CTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTC 1254442 ||||||||| | | |||| || |||||||| | |||||||| || ||||| Sbjct 2302 CTGGATCTCTTGGGACGCGATGGTCCAGCGCTTGT---AATGCGCCAGGCGCGACGCCTC 2246 Query 1254443 GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTT 1254502 | |||| || |||| ||||||||||| ||||||||||||| ||| | |||| Sbjct 2245 GCCCGCGATCCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGA 2186 Query 1254503 GGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||||||| ||| |||||||||||||| ||||||||||| | | || |||||| Sbjct 2185 CGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2129 >seq122114 Length=16334 Score = 102 bits (112), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| || | ||| || ||||||||| | ||||| Sbjct 16334 CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTACTGCGC 16275 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| || |||||| ||||||| || | ||||| ||| || ||||||||| Sbjct 16274 CAGGCGCGACGCCTCGCCCGCGATGCGCTCAAAGATGTCAGCGACGAAGGAGTTCATGGT 16215 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 ||| | |||| |||||||| || ||||||||||||| ||||||||||| || Sbjct 16214 GATCATGGCCTTGGATGAGATGCCAGTCTCCCGGTGCACCTGCTTCAGCACCTTGTAAAT 16155 Query 1254548 G 1254548 | Sbjct 16154 G 16154 >seq46369 Length=15723 Score = 95.1 bits (104), Expect = 1e-13 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||| | ||||||||| | |||| ||| || |||||| |||| ||||| Sbjct 12876 GCTGCAAACTACTTAGACATCAAGGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAAT 12935 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||| || | || |||||||| ||||||||||| || ||||| Sbjct 12936 ATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAATATCAA 12985 >seq52178 Length=36987 Score = 86.0 bits (94), Expect = 8e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| || | ||| || ||||||||| | ||||| Sbjct 1 CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTACTGCGC 60 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| || |||||| ||||||| |||| || || |||| || || ||||||| Sbjct 61 CAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAAATATCAGTGACGAAGGAATTCATGAT 120 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 ||| | |||| ||||| || ||| || ||||| ||||| | || || ||||| Sbjct 121 GCTCATGGCCTTGGATGAGATCCCAGTGTCTGGATGCACTTGCTTTAATACTTTATAGAT 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6093967818378500