Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq10813 161 1e-33
seq135659 158 1e-32
seq83376 158 1e-32
seq80301 158 1e-32
seq79723 158 1e-32
seq77571 149 8e-30
seq76101 122 1e-21
seq72956 122 1e-21
seq80303 111 2e-18
seq122114 102 1e-15
seq46369 95.1 1e-13
seq52178 86.0 8e-11
>seq10813
Length=5319
Score = 161 bits (178), Expect = 1e-33
Identities = 166/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 455 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 396
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| ||| |||||| ||||||| |||| |
Sbjct 395 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATGCGTTCGAAGA 336
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 335 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 276
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 275 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 239
Score = 152 bits (168), Expect = 6e-31
Identities = 164/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 4599 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 4658
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || ||||| ||||||| |||| |
Sbjct 4659 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCCCCCGCGATGCGTTCGAAGA 4718
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 4719 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 4778
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 4779 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 4815
>seq135659
Length=1531
Score = 158 bits (174), Expect = 1e-32
Identities = 168/219 (77%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 1480 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 1421
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCG-GCCTCGGTGC-CGATGCGGTCGAT 1254460
| || ||||||||| | |||||||| |||| |||||| | ||||||| ||||
Sbjct 1420 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGCGACGCCTCGCCCCGCGATGCGTTCGAA 1361
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520
||||||||||| ||||||||||||| ||| | |||| ||||||||| ||| ||
Sbjct 1360 GATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGG 1301
Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||||| ||||||||||| | | || ||||||
Sbjct 1300 GTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 1262
>seq83376
Length=7469
Score = 158 bits (174), Expect = 1e-32
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 727 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 668
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || |||||| ||||||| |||| |
Sbjct 667 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGTTCGAAGA 608
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 607 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 548
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 547 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 511
>seq80301
Length=5813
Score = 158 bits (174), Expect = 1e-32
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 2330 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2271
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || |||||| ||||||| |||| |
Sbjct 2270 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGTTCGAAGA 2211
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 2210 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 2151
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 2150 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2114
>seq79723
Length=27194
Score = 158 bits (174), Expect = 1e-32
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 15062 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 15003
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || |||||| ||||||| |||| |
Sbjct 15002 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGTTCGAAGA 14943
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 14942 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 14883
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 14882 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 14846
>seq77571
Length=13609
Score = 149 bits (164), Expect = 8e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 676 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 617
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || ||||| ||||||| |||| |
Sbjct 616 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCCCCCGCGATGCGTTCGAAGA 557
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| | ||||||| ||| ||||
Sbjct 556 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGGGATGCCCGTGTCCGGGT 497
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 496 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 460
>seq76101
Length=7649
Score = 122 bits (134), Expect = 1e-21
Identities = 148/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||| ||||| ||| | || ||||||||| |||||||||||||| | | ||
Sbjct 1483 GCTTGGCCAACTCGCCCGGCAGCAGCAAGCGCACGGCTGTCTGGATCTCGCGAGAGGTGA 1424
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||||||| ||||| | || || |||| |
Sbjct 1423 TAGTAGAGCGCTTGTTATAATGCGCCAGACGGGACGCCTCACCAGCAATACGTTCGAAAA 1364
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||||||||||||||||| ||| | ||| |||||||| || || |
Sbjct 1363 TGTCATTGACAAACGAGTTCATGATGCCCATAGCTTTGGACGAGATGCCAGTATCCGGAT 1304
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| ||||| |||||
Sbjct 1303 GAACCTGCTTCAGCACTTTGTA 1282
>seq72956
Length=13412
Score = 122 bits (134), Expect = 1e-21
Identities = 149/202 (74%), Gaps = 1/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||| || ||| ||| | |||||||||||| |||| | |||||| | ||
Sbjct 4421 GCTTGGCCAACTCCCCGAGCAGCAGCAGGCGCACGGCCATCTGCACCTCGCGGGACGTGA 4480
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | |||||||| ||| |||||| || |||| | || | |
Sbjct 4481 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGAAGCCTCGCTGGGGATGTGCTCAAAGA 4540
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| | ||||||||||| ||| | ||| |||||||| ||| ||||
Sbjct 4541 TGTCGTTGACCAGCGAGTTCATGATGCCCATTGCCTTCGATGAGATGCCTGTGTCTGGGT 4600
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||| |||||||||||
Sbjct 4601 -CACCTGCTTCAGCACCTTGTA 4621
Score = 105 bits (116), Expect = 8e-17
Identities = 146/202 (72%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||||||| || ||| | ||||| |||||| ||| | |||||| || ||
Sbjct 1419 GCTTGGCCAGTTCCCCCGGCAGCAGCAGGCCCACGGCCACCTGCACCTCGCGGATGT-GA 1361
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| ||| |||||| || ||| ||| || | |
Sbjct 1360 TGGTCCAGCGCTTGTTGTAATGCGCCAGGCGGGGAGCCTCGCTGGCGACGCGCTCAACGA 1301
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
| | ||||| || |||||||||| ||| | ||| |||||||| |||||| |
Sbjct 1300 TATTGTTGAATAATGAGTTCATGATGCCCATGGCCTTCGATGAGATGCCTCTGTCGGG-T 1242
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| ||| |||||||
Sbjct 1241 GCACCTGCTTCAGCTCCTTGTA 1220
>seq80303
Length=5398
Score = 111 bits (122), Expect = 2e-18
Identities = 131/177 (74%), Gaps = 3/177 (2%)
Strand=Plus/Minus
Query 1254383 CTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTC 1254442
||||||||| | | |||| || |||||||| | |||||||| || |||||
Sbjct 2302 CTGGATCTCTTGGGACGCGATGGTCCAGCGCTTGT---AATGCGCCAGGCGCGACGCCTC 2246
Query 1254443 GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTT 1254502
| |||| || |||| ||||||||||| ||||||||||||| ||| | ||||
Sbjct 2245 GCCCGCGATCCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGA 2186
Query 1254503 GGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
||||||||| ||| |||||||||||||| ||||||||||| | | || ||||||
Sbjct 2185 CGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2129
>seq122114
Length=16334
Score = 102 bits (112), Expect = 1e-15
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427
|||||||||||| ||||||||||| || | ||| || ||||||||| | |||||
Sbjct 16334 CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTACTGCGC 16275
Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487
||| || |||||| ||||||| || | ||||| ||| || |||||||||
Sbjct 16274 CAGGCGCGACGCCTCGCCCGCGATGCGCTCAAAGATGTCAGCGACGAAGGAGTTCATGGT 16215
Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547
||| | |||| |||||||| || ||||||||||||| ||||||||||| ||
Sbjct 16214 GATCATGGCCTTGGATGAGATGCCAGTCTCCCGGTGCACCTGCTTCAGCACCTTGTAAAT 16155
Query 1254548 G 1254548
|
Sbjct 16154 G 16154
>seq46369
Length=15723
Score = 95.1 bits (104), Expect = 1e-13
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| || |||||| | ||||||||| | |||| ||| || |||||| |||| |||||
Sbjct 12876 GCTGCAAACTACTTAGACATCAAGGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAAT 12935
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295
||||||||||| || | || |||||||| ||||||||||| || |||||
Sbjct 12936 ATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAATATCAA 12985
>seq52178
Length=36987
Score = 86.0 bits (94), Expect = 8e-11
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427
|||||||||||| ||||||||||| || | ||| || ||||||||| | |||||
Sbjct 1 CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTACTGCGC 60
Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487
||| || |||||| ||||||| |||| || || |||| || || |||||||
Sbjct 61 CAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAAATATCAGTGACGAAGGAATTCATGAT 120
Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547
||| | |||| ||||| || ||| || ||||| ||||| | || || |||||
Sbjct 121 GCTCATGGCCTTGGATGAGATCCCAGTGTCTGGATGCACTTGCTTTAATACTTTATAGAT 180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6093967818378500
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