Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq12448 131 2e-25 seq5492 123 2e-23 seq63810 122 8e-23 seq33159 118 1e-21 seq104951 109 5e-19 seq157463 100 3e-16 seq2401 95.1 1e-14 seq74389 87.8 2e-12 seq113583 82.4 7e-11 >seq12448 Length=17785 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || || ||||| || ||| || | Sbjct 3543 GATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTC 3484 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| |||||| |||||||| || ||||||||||| ||||| |||| Sbjct 3483 GGATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTAATCA 3424 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 3423 GCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAAAA 3364 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||| |||| || || || || | |||||| || Sbjct 3363 CATTCAACAGGAGTCCACCCTTCATCTTGTGTTGAGA 3327 >seq5492 Length=9153 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || || ||||| || ||| || Sbjct 3601 GATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTT 3660 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 3661 GGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 3720 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || | ||| ||| | | | |||| || || || Sbjct 3721 GCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGACTACAA 3780 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||| || | || || || Sbjct 3781 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 3828 >seq63810 Length=35167 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || | |||||||| || || || || || || || || Sbjct 28144 ACAATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 28085 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||||||||||| || || || || || Sbjct 28084 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGAC 28025 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || |||||||||||||| ||||||||||| ||| | | |||| || || Sbjct 28024 CAGCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTAC 27965 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| || || || ||| |||| Sbjct 27964 AACATCCAGAAGGAGTCCACTCTGCACCTGGT 27933 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | |||||||| || || || || || || || ||| Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27566 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| ||||||||||| ||| | | |||| || || ||| Sbjct 27565 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27506 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 27505 ATCCAGAAGGAGTCCACTCTGCACCTGGT 27477 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | |||||||| || || || || || || || ||| Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27794 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| ||||||||||| ||| | | |||| || || ||| Sbjct 27793 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27734 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || ||| |||| Sbjct 27733 ATCCAGAAAGAGTCCACTCTGCACCTGGT 27705 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||||| | | || || || || || || ||| Sbjct 27457 ATGCAGATCTTCGTGAAGACCTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAGT 27398 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || | || || || || Sbjct 27397 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCAGCCCCCCTGACCAG 27338 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| ||||||||||| ||| | | |||| || || ||| Sbjct 27337 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27278 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || |||| |||| ||| | ||||| Sbjct 27277 ATCCAGAAGGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGG 27231 >seq33159 Length=15523 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || || || || || || || ||||| || ||| || | Sbjct 2319 GATGCAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTC 2260 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| ||||| || || || |||| ||| ||||| |||| Sbjct 2259 AGATACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGATCT 2200 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 2199 GTAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTACAA 2140 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||| || | || || || Sbjct 2139 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 2092 >seq104951 Length=12537 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAG-TAGAAGCCA 24761 ||||||||||||| ||||| || || || || || || || ||| ||| | || ||| Sbjct 11244 GATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCA 11185 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | |||| || ||| || ||||||||||| || || || || || || | Sbjct 11184 GTGACACTATTGAAAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 11125 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| |||| |||| || ||||||||||||||| | | | ||||| |||| Sbjct 11124 AGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATA 11065 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| | || || || || || ||||||||| Sbjct 11064 ACATCGAGAAAGAGTCCACTCTGCACTTGGTG 11033 >seq157463 Length=7943 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||| | || | |||| || || || || || || || || || || ||| || | Sbjct 561 GATGCAGCTTTTCGTGAAAATCCTTACTGGGAAGACCATCACTCTTGAGGTTGAACCCTC 502 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | ||| |||||| |||| |||| ||| || || |||||||| ||||| | ||| Sbjct 501 GGGTACAATAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGCTCA 442 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||| || || |||||||| ||| | | ||||||| || || Sbjct 441 GCAAAGACCGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTACAA 382 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| || || || || || | |||||| || | || || || Sbjct 381 CATTCAAAAAGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 334 >seq2401 Length=18371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||| | | || || ||||| || || || || || || || || | ||| Sbjct 144 GATGCAGATCTGTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGGGCCCAA 203 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || ||||| |||| || || || || || || || Sbjct 204 TGACACTATTGAGAATGTCAAAGCTAAACTCCAAAACAAGGAGGGTATCCCACCTGACCA 263 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| ||||| || ||||||||||||||| | | | ||||| ||||| Sbjct 264 GCAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 323 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 || || || | || || || ||||||||| | || |||| Sbjct 324 TATCCAGAAAGCGTCCACTCTGCACTTGGTGCTTCGTCTGCG 365 >seq74389 Length=16610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || | || || || || || || || || | || ||| Sbjct 10266 GATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACACTTGAGATCGAGCCCAG 10325 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || |||||| |||| || || || || || || || Sbjct 10326 TGACACTATCGAGAATGTCAAAGCTAAAATCCAACACAAGGAGGGCATCCCACCTGACCA 10385 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | | | |||| |||||||| |||||| |||||||| | | | ||||| ||||| Sbjct 10386 GGAGCATCTGATTTTTGCCGGCAAACAGATGGAGGATGGCCGCACTCTCTCAGACTATAA 10445 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || || ||||||||| Sbjct 10446 TATCCAGAAAGAGTCCACTCTGCACTTGGTG 10476 >seq113583 Length=22641 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 17648 GATGCAGATCTTG-TGAAGACCCTGACGGGCAAGACCATCACACTCGAGGTCGAGCCCAG 17590 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || || ||| | ||||||||| | || || || || || || || Sbjct 17589 TGACACTACTGAGCATGTCAAAGCTCAAATCCAAGACCAGGAGGGCATCCCGCCTGAGCA 17530 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| | ||| || ||||||||||||||| || | | ||||| ||||| Sbjct 17529 GCAGCGTCTGATTTGTGCGGGCAAACAGCTGGAGGATGGCAGCA--CTCTCAGACTATAA 17472 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || | ||||||||| Sbjct 17471 TATCCAGAAAGAGTCCACCGTGCACTTGGTG 17441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448994992940000