Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq33159 120 2e-22
seq12448 120 2e-22
seq5492 111 1e-19
seq63810 107 1e-18
seq90327 104 2e-17
seq157463 102 6e-17
>seq33159
Length=15523
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | |||| |||
Sbjct 2106 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCATCCATC 2165
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||||| | |||| || ||||| | || || ||
Sbjct 2166 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCCTTATC 2225
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|||| || || ||| |||||| || || || |||| || || || || || ||
Sbjct 2226 CTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 2285
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| | |||||| ||||| |||||||| ||
Sbjct 2286 CTTCCCAGTAAGGGTTTTCACAAAAATCTGCATCTT 2321
>seq12448
Length=17785
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || | ||||||||| || || | | |||| |||
Sbjct 3330 CAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCATCCATC 3389
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||| ||| | |||| ||||||||||| || ||||| || ||||| ||
Sbjct 3390 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTTATC 3449
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || ||| ||| |||||| || || || |||| || || || || || ||
Sbjct 3450 CTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 3509
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| | |||||| || || |||||||| ||
Sbjct 3510 CTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3545
>seq5492
Length=9153
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | |||| |||
Sbjct 3814 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCACCCATC 3755
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| |||| ||||||||| | |||| |||||||||||| || ||||| || || || ||
Sbjct 3754 TTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3695
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| ||||| || || | |||| || || || || || ||
Sbjct 3694 CTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTGATGGT 3635
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| | |||||| || || |||||||| ||
Sbjct 3634 CTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599
>seq63810
Length=35167
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| |||| ||| || ||||| || || || ||||| || || |
Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || |||||||| ||| | ||||| || ||||| || || ||
Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
| |||||||||||||| | || |||||| | || | |||||| | || ||
Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27410
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | | || || |||| || || || ||||||||
Sbjct 27411 TCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457
Score = 105 bits (116), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 29563 CCCCTC--AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620
|||||| | ||| || |||| || || ||||| || || || ||||| || || | |
Sbjct 27916 CCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACA 27975
Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680
||||| ||| || || |||||||| ||| | ||||| | ||||| || || || |
Sbjct 27976 GAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGA 28035
Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740
| |||||||||||||| | || |||||| | || | |||||| | || || |
Sbjct 28036 TGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCT 28095
Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || || || || || || || ||||| || ||||| |||||||||
Sbjct 28096 CCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142
Score = 104 bits (114), Expect = 2e-17
Identities = 159/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 29563 CCCCTC--AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620
|||||| | ||| || |||| || || ||||| ||||| || ||||| || || | |
Sbjct 27688 CCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACA 27747
Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680
||||| ||| || || |||||||| ||| | ||||| | ||||| || || || |
Sbjct 27748 GAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGA 27807
Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740
| |||||||||||||| | || |||||| | || | |||||| | || || |
Sbjct 27808 TGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCT 27867
Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || || || || || || ||||| || || || ||||||||
Sbjct 27868 CCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 29563 CCCCTC--AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620
|||||| | ||| || |||| || || ||||| || || || ||||| || || | |
Sbjct 27460 CCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACA 27519
Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680
||||| ||| || || |||||||| ||| | ||||| | ||||| || || || |
Sbjct 27520 GAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGA 27579
Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740
| |||||||||||||| | || |||||| | || | |||||| | || || |
Sbjct 27580 TGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCT 27639
Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || || || || || || ||||| || || || ||||||||
Sbjct 27640 CCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685
>seq90327
Length=63722
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 29580 CAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAG 29639
|| |||||| ||||| || |||| |||||| || || | | ||| | ||| || ||
Sbjct 54691 CAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAG 54632
Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699
||| ||||||||| | ||| |||||||||||| || ||||| || || || || || |
Sbjct 54631 TTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 54572
Query 29700 TTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759
|| ||| ||| ||||| || || || |||| || |||||||| || || || ||
Sbjct 54571 CTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCC 54512
Query 29760 AGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| | || |||||||| ||
Sbjct 54511 GGTATGGGTTTCCATGAAAATCTGCATCTT 54482
>seq157463
Length=7943
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| |||||||||||||| || || | | || || |||
Sbjct 348 CAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAAAGTACGTCCATC 407
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| || || ||||||||| | ||| |||||||||| | || ||||| || || || ||
Sbjct 408 TTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATC 467
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| || || | | |||||| || | || |||| || |||||||| || ||
Sbjct 468 CTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGAGTGATGGT 527
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| | | |||| || || | |||||| ||
Sbjct 528 CTTCCCAGTAAGGATTTTCACGAAAAGCTGCATCTT 563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384465675130500
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