Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq33159 120 2e-22 seq12448 120 2e-22 seq5492 111 1e-19 seq63810 107 1e-18 seq90327 104 2e-17 seq157463 102 6e-17 >seq33159 Length=15523 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | |||| ||| Sbjct 2106 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCATCCATC 2165 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||| | |||| || ||||| | || || || Sbjct 2166 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCCTTATC 2225 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 |||| || || ||| |||||| || || || |||| || || || || || || Sbjct 2226 CTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 2285 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | |||||| ||||| |||||||| || Sbjct 2286 CTTCCCAGTAAGGGTTTTCACAAAAATCTGCATCTT 2321 >seq12448 Length=17785 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || | ||||||||| || || | | |||| ||| Sbjct 3330 CAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCATCCATC 3389 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||| ||| | |||| ||||||||||| || ||||| || ||||| || Sbjct 3390 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTTATC 3449 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| |||||| || || || |||| || || || || || || Sbjct 3450 CTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 3509 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | |||||| || || |||||||| || Sbjct 3510 CTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3545 >seq5492 Length=9153 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | |||| ||| Sbjct 3814 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCACCCATC 3755 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || |||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 3754 TTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3695 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| ||||| || || | |||| || || || || || || Sbjct 3694 CTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTGATGGT 3635 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | |||||| || || |||||||| || Sbjct 3634 CTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599 >seq63810 Length=35167 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| ||| || ||||| || || || ||||| || || | Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || |||||||| ||| | ||||| || ||||| || || || Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | |||||||||||||| | || |||||| | || | |||||| | || || Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27410 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | | || || |||| || || || |||||||| Sbjct 27411 TCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457 Score = 105 bits (116), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 29563 CCCCTC--AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620 |||||| | ||| || |||| || || ||||| || || || ||||| || || | | Sbjct 27916 CCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACA 27975 Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680 ||||| ||| || || |||||||| ||| | ||||| | ||||| || || || | Sbjct 27976 GAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGA 28035 Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 | |||||||||||||| | || |||||| | || | |||||| | || || | Sbjct 28036 TGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCT 28095 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || || || || ||||| || ||||| ||||||||| Sbjct 28096 CCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142 Score = 104 bits (114), Expect = 2e-17 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 29563 CCCCTC--AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620 |||||| | ||| || |||| || || ||||| ||||| || ||||| || || | | Sbjct 27688 CCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACA 27747 Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680 ||||| ||| || || |||||||| ||| | ||||| | ||||| || || || | Sbjct 27748 GAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGA 27807 Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 | |||||||||||||| | || |||||| | || | |||||| | || || | Sbjct 27808 TGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCT 27867 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || || ||||| || || || |||||||| Sbjct 27868 CCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 29563 CCCCTC--AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620 |||||| | ||| || |||| || || ||||| || || || ||||| || || | | Sbjct 27460 CCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACA 27519 Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680 ||||| ||| || || |||||||| ||| | ||||| | ||||| || || || | Sbjct 27520 GAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGA 27579 Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 | |||||||||||||| | || |||||| | || | |||||| | || || | Sbjct 27580 TGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCT 27639 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || || ||||| || || || |||||||| Sbjct 27640 CCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 >seq90327 Length=63722 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29580 CAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAG 29639 || |||||| ||||| || |||| |||||| || || | | ||| | ||| || || Sbjct 54691 CAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAG 54632 Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 ||| ||||||||| | ||| |||||||||||| || ||||| || || || || || | Sbjct 54631 TTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 54572 Query 29700 TTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 || ||| ||| ||||| || || || |||| || |||||||| || || || || Sbjct 54571 CTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCC 54512 Query 29760 AGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | || |||||||| || Sbjct 54511 GGTATGGGTTTCCATGAAAATCTGCATCTT 54482 >seq157463 Length=7943 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| |||||||||||||| || || | | || || ||| Sbjct 348 CAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAAAGTACGTCCATC 407 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | ||| |||||||||| | || ||||| || || || || Sbjct 408 TTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATC 467 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || | | |||||| || | || |||| || |||||||| || || Sbjct 468 CTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGAGTGATGGT 527 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | | |||| || || | |||||| || Sbjct 528 CTTCCCAGTAAGGATTTTCACGAAAAGCTGCATCTT 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384465675130500