Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq72612 89.7 5e-13 >seq72612 Length=33291 Score = 89.7 bits (98), Expect = 5e-13 Identities = 171/250 (68%), Gaps = 18/250 (7%) Strand=Plus/Plus Query 1520 GCTTTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATA 1579 |||| ||| ||||| || |||| |||||| |||| || | | || | | ||||| Sbjct 3536 GCTTCGGCTGCAGCTTCTTGAGTCCGATGTGTTCGCCATGGTCTCCGGCAGAT--ATATA 3593 Query 1580 AAGGGCTAGTTGTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG- 1638 |||| | | | | |||| || || || || ||||||| || || ||||| ||||| Sbjct 3594 AAGGCCCGGCTATGAGGAAGAACAACCAATGTCCCGCCCATGGCAAGATCATTGCTCAGC 3653 Query 1639 ----------AAAACATT-TCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCG 1687 |||||| | ||||| || ||| | | | || | | |||| |||| | Sbjct 3654 TTTTCTCCAGAAAACACTGTCAAAGTTCTGCTACCCAAGGCGGGGTGATAGCAGGGCTGG 3713 Query 1688 AAGGAAATG---AAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACAC 1744 ||||||||| | |||||||| ||| ||||||||||| |||| || | || | ||||| Sbjct 3714 AAGGAAATGCTGAGGTTACCCTCAAGGTGGGCAGATGCCTGACTCAGTACAGACACACA- 3772 Query 1745 CGGGCACCCA 1754 ||||||| || Sbjct 3773 CGGGCACACA 3782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/109 (78%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 1067 ATGCCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAA 1126 ||| ||||||| |||||||| |||||||||| ||| || || | | | |||| Sbjct 3077 ATGTCCACAGCCCTAGCTTCAGGTCTGAAAA-GAGCCCCTTC----TGGGGGCCATGGAA 3131 Query 1127 GGCATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACAT 1175 ||||||||||||||| || || ||||| ||||||| |||||||||||| Sbjct 3132 GGCATTTTAAAGAAATGGTTTGGAAAAGAAATCTGTAGGGCACTTACAT 3180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437680139000000