Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq72612 89.7 5e-13
>seq72612
Length=33291
Score = 89.7 bits (98), Expect = 5e-13
Identities = 171/250 (68%), Gaps = 18/250 (7%)
Strand=Plus/Plus
Query 1520 GCTTTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATA 1579
|||| ||| ||||| || |||| |||||| |||| || | | || | | |||||
Sbjct 3536 GCTTCGGCTGCAGCTTCTTGAGTCCGATGTGTTCGCCATGGTCTCCGGCAGAT--ATATA 3593
Query 1580 AAGGGCTAGTTGTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG- 1638
|||| | | | | |||| || || || || ||||||| || || ||||| |||||
Sbjct 3594 AAGGCCCGGCTATGAGGAAGAACAACCAATGTCCCGCCCATGGCAAGATCATTGCTCAGC 3653
Query 1639 ----------AAAACATT-TCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCG 1687
|||||| | ||||| || ||| | | | || | | |||| |||| |
Sbjct 3654 TTTTCTCCAGAAAACACTGTCAAAGTTCTGCTACCCAAGGCGGGGTGATAGCAGGGCTGG 3713
Query 1688 AAGGAAATG---AAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACAC 1744
||||||||| | |||||||| ||| ||||||||||| |||| || | || | |||||
Sbjct 3714 AAGGAAATGCTGAGGTTACCCTCAAGGTGGGCAGATGCCTGACTCAGTACAGACACACA- 3772
Query 1745 CGGGCACCCA 1754
||||||| ||
Sbjct 3773 CGGGCACACA 3782
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/109 (78%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 1067 ATGCCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAA 1126
||| ||||||| |||||||| |||||||||| ||| || || | | | ||||
Sbjct 3077 ATGTCCACAGCCCTAGCTTCAGGTCTGAAAA-GAGCCCCTTC----TGGGGGCCATGGAA 3131
Query 1127 GGCATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACAT 1175
||||||||||||||| || || ||||| ||||||| ||||||||||||
Sbjct 3132 GGCATTTTAAAGAAATGGTTTGGAAAAGAAATCTGTAGGGCACTTACAT 3180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 437680139000000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |