Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq65056 107 2e-18
seq97442 105 9e-18
seq90416 105 9e-18
seq64078 104 3e-17
seq17409 104 3e-17
seq12135 98.7 1e-15
>seq65056
Length=14552
Score = 107 bits (118), Expect = 2e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
||| |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 4227 CTTGTTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 4286
Query 8713 GATTCCCCGACGAGGAG 8729
|||||||||||| ||||
Sbjct 4287 GATTCCCCGACGGGGAG 4303
Score = 100 bits (110), Expect = 4e-16
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4232 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4291
Query 11789 CCCGACGAGGAGGGAG-GTTAA 11809
||||||| |||| | | |||||
Sbjct 4292 CCCGACGGGGAGAGCGCGTTAA 4313
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 4303 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4244
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 4243 TACTAACGAGGA 4232
>seq97442
Length=63513
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 30154 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 30213
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 30214 CCCCGACGGGGAG 30226
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 30155 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 30214
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 30215 CCCGACGGGGAGG 30227
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 30226 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30167
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 30166 TACTAACGAGGA 30155
>seq90416
Length=8837
Score = 105 bits (116), Expect = 9e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709
|||||| | |||||||||||||||||| ||||| |||| ||||| | |||||||||||||
Sbjct 5868 TGCCTTCT-CCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 5810
Query 8710 TTCGATTCCCCGACGAGGAG 8729
||||||||||||||| ||||
Sbjct 5809 TTCGATTCCCCGACGGGGAG 5790
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2372 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2313
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 2312 CCCCGACGGGGAGG 2299
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2371 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2312
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2311 CCCGACGGGGAG 2300
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 5861 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 5802
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 5801 CCCGACGGGGAGG 5789
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2300 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2359
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2360 TACTAACGAGGA 2371
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 5790 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5849
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 5850 TACTAACGAGGA 5861
>seq64078
Length=34826
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 26189 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 26248
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 26249 CCCGACGGGGAG 26260
Score = 102 bits (112), Expect = 1e-16
Identities = 69/76 (91%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 26189 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 26248
Query 11789 CCCGACGAGGAGGGAG 11804
||||||| ||||| ||
Sbjct 26249 CCCGACGGGGAGGCAG 26264
Score = 96.9 bits (106), Expect = 5e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 26260 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26201
Query 139413 TACTAACGAGGAT 139425
|||||||||||||
Sbjct 26200 TACTAACGAGGAT 26188
>seq17409
Length=15436
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 3861 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 3920
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 3921 CCCGACGGGGAG 3932
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 3861 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 3920
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 3921 CCCGACGGGGAGG 3933
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 3932 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3873
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 3872 TACTAACGAGGA 3861
>seq12135
Length=8511
Score = 98.7 bits (108), Expect = 1e-15
Identities = 67/74 (91%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||| ||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 637 GTCCTCGTTAGTATAGGGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 578
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 577 CCCCGACGGGGAGG 564
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||| ||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 636 TCCTCGTTAGTATAGGGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 577
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 576 CCCGACGGGGAG 565
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||| |||
Sbjct 565 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCCCTA 624
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 625 TACTAACGAGGA 636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 651535030120000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |