Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq48881 136 4e-27 seq63810 131 2e-25 seq113583 113 4e-20 seq104951 104 2e-17 seq89363 104 2e-17 seq18747 100 3e-16 seq2401 96.9 3e-15 seq123873 93.3 4e-14 seq74389 93.3 4e-14 seq32806 93.3 4e-14 seq109872 84.2 2e-11 seq124007 82.4 7e-11 >seq48881 Length=14873 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 7416 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 7474 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 7475 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 7534 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 7535 TCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGG 7594 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||| Sbjct 7595 TCTTCACGAAAATTTGCAT 7613 >seq63810 Length=35167 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || ||| | | | || || ||||| ||||| Sbjct 27717 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCTTCCAGCTGTTTGCC 27775 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | |||||||||||| || |||||||| || ||||| |||||| ||| Sbjct 27776 GGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 27835 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 27836 GACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGT 27895 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 27896 CTTCACGAAGATCTGCATG 27914 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | || || ||||| ||||| Sbjct 27489 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCTTCCAGCTGTTTGCC 27547 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | |||||||||||| || |||||||| || ||||| |||||| ||| Sbjct 27548 GGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 27607 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 27608 GACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGT 27667 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 27668 CTTCACGAAGATCTGCATG 27686 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | || || ||||| ||||| Sbjct 27945 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCTTCCAGCTGTTTGCC 28003 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | |||||||||||| || |||||||| || ||||| |||||| ||| Sbjct 28004 GGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 28063 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 28064 GACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGT 28123 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 28124 CTTCACAAAGATCTGCAT 28141 >seq113583 Length=22641 Score = 113 bits (124), Expect = 4e-20 Identities = 152/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| ||||| || | | | ||| ||||| ||| Sbjct 17445 AAGTGCACGGTGGACTCTTTCTGGATATTATAGT--CTGAGAGTGCTGCCATCCTCCAGC 17502 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || |||||||| |||| || |||||||| || || |||||||| |||| ||| ||| Sbjct 17503 TGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTGGAT- 17561 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || || |||| |||||| ||||| ||||||| || |||| |||| ||| ||||| Sbjct 17562 TTGAGCTTTGACATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCC 17621 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 17622 CGTCAGGGTCTTCAC-AAGATCTGCAT 17647 >seq104951 Length=12537 Score = 104 bits (114), Expect = 2e-17 Identities = 147/200 (74%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||| || || || || | ||| | | | ||||| ||||| ||||| Sbjct 11046 GTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCA-TCCTCCAGCTGTTTGCC 11104 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 | | |||| || ||||||||||| || |||||||| |||||||| ||| ||| || | Sbjct 11105 CACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTT 11163 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCA-CGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 ||| | |||| ||||| ||||||| | | | || |||| ||| ||||| ||||| Sbjct 11164 TGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCTTGCCTGTCAGG 11223 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| | || |||||||| Sbjct 11224 GTTTTCCCAAAGATCTGCAT 11243 >seq89363 Length=18264 Score = 104 bits (114), Expect = 2e-17 Identities = 144/196 (73%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| ||||| ||||| | |||| | ||||| ||||| |||||| Sbjct 15804 GTGGACTCTTTCTGGATATTATAATCTAAGAGAGTGGCCA--TCCTCCAGCTGTTTGCCC 15861 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 | ||| || ||||||||||| | |||||||| |||||||| ||| ||| || || Sbjct 15862 TCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTGGAT-TTTAGCGTT 15920 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| ||||||| || |||| || | ||| ||||| |||| || Sbjct 15921 GACGTTCTCAGTGGTGTCACTGGGCTCGACCTCGA--GT-ATGGTCTTGCCCATCAGGGT 15977 Query 133643 TTTTACGAAAATCTGC 133658 || || || |||||| Sbjct 15978 CTTCACAAAGATCTGC 15993 >seq18747 Length=37247 Score = 100 bits (110), Expect = 3e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||| |||||||| |||| || |||||||||||||| |||||||| |||||||| | Sbjct 35528 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 35587 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 || ||| |||| || | || ||||| ||||| || |||| |||| ||| ||| Sbjct 35588 AT-TTTAGCTTTGACTTCGCAGTAGTGTCACGGGGCTTGACCTCGAGTGTGATGGTCTTG 35646 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || || |||||||| Sbjct 35647 CCCGTCAGGGTCTTCAC-AAGATCTGCAT 35674 >seq2401 Length=18371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||| ||||||| ||||| || || | ||| | | | ||||| ||||| ||||| Sbjct 341 GTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCA-TCCTCCAGCTGTTTGCC 283 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || |||| || ||||||||||| || ||||| || ||||||| || ||| || | Sbjct 282 TGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT-TTTGGAGTTTAGCTT 224 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||| | || || | ||||| ||| ||||| || || | Sbjct 223 TGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCTTGCCTGTTAGGG 164 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || | |||||||| Sbjct 163 TCTTCACACAGATCTGCAT 145 >seq123873 Length=8769 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/200 (73%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| ||||| || || | ||| | | | ||||| ||||| |||| Sbjct 302 GGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCA-TCCTCCAGCTGTTTGC 244 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | || |||| || ||||||||||| || ||||||| ||||||| ||| ||| || Sbjct 243 CTGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGC---CCTTGTCTTGGAT-TTTAGCT 188 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| ||||| |||||| || |||| |||| | | ||| | |||| Sbjct 187 TTGACATTCTCAGTAGTGTCACTGGGCTTGACCTCGAGTGTGATGTTCTTGTCTATCAGG 128 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 127 GTCTTCAC-AAGATCTGCAT 109 >seq74389 Length=16610 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||| || || | ||| | | | ||||| | ||| ||||| Sbjct 10463 GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCA-TCCTCCATCTGTTTGCC 10405 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || |||| || ||| |||||| || |||||||| ||||||| | || ||| || | Sbjct 10404 GGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGT-GTTGGATTTTAGCTT 10346 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| | || | |||| ||| ||||| |||| | Sbjct 10345 TGACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTTGCCCGTCAAGG 10286 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 10285 TCTTCACAAAGATCTGCAT 10267 >seq32806 Length=18495 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||| |||||||||| ||||| || || | ||| | | | || || ||||| |||| Sbjct 13598 GTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCA-TCGTCCAGCTGTTTGCT 13540 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || || | | ||||||||||| || |||||||| ||||| || || ||| || | Sbjct 13539 GGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATC-TTGGGTTTTAGCTT 13481 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| || || |||||||||| |||| |||| ||| ||||| ||||| | Sbjct 13480 TGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCTTGCCTGTCAGGG 13421 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 13420 TCTTCACAAAGATGTGCAT 13402 >seq109872 Length=19372 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||| || ||||| || || | || ||| | ||||| ||||| ||||| Sbjct 16151 GTGGACTCTTTTTGCATATTATAGTCTGAGAGAATGCGACCA-TCCTCCAGCTGTTTGCC 16209 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| ||| || | |||||||| || |||||||||||| |||| ||| ||| || | Sbjct 16210 CGCAAAAAACAGACATTGCTGGTCAGGTGGGATGCCTTCCGTGTCTTGGAT-TTTAGCTT 16268 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| ||||||| || || | | | ||| | ||| || | | Sbjct 16269 TGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGCAATGGTCTAGCCCTTCGGGG 16328 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 16329 TCTTCACAAAGATCTGCAT 16347 >seq124007 Length=20016 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||||||||||||||||||| |||| ||||| || ||| Sbjct 15495 TACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 15436 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || || | ||| || | || ||||| |||||||| || Sbjct 15435 CTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGG 15398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482450937020000