Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq69878 235 6e-57
seq28486 167 3e-36
seq126506 91.5 2e-13
>seq69878
Length=27291
Score = 235 bits (260), Expect = 6e-57
Identities = 612/923 (66%), Gaps = 19/923 (2%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | | || ||| || | |||||||| || || | ||| ||
Sbjct 4936 CCAGGGCTTTATGCCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATATCTG 4995
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || |||| ||| ||| || ||| ||||| || | || || |
Sbjct 4996 TGTCAAACTTATTAGCAAACAAGTGGTGC---TTGCGCAACATCCAGTTCAAGTCACCTG 5052
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
||| || || |||||||| || ||||| || || ||||| ||||| || |||| || |
Sbjct 5053 CTCCAAAAACACACACGGAGCGTACGTGGACACCACTGCAGGGCGGGTAGGGGGCGCCCT 5112
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| ||||| || || |||| |||||||| || ||||||| || || ||||||||||
Sbjct 5113 TGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGG 5172
Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
| |||| ||||| | || | || || | || || || | || | ||||| | |
Sbjct 5173 ACATGTCATACTTATGG-CTTAGGGACAGTGAGCCTGGGACTTCAGGGATCCTCTGAATA 5231
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
|| ||||| || | || ||||| || || || || || | ||||||||| |||| |
Sbjct 5232 GTGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGG 5291
Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
| ||| || | ||| | || || || ||| | || | ||| || || ||
Sbjct 5292 ATTTTTTCATTCTCTAGCACATACTCCACATAATTCCTACTGACCACAAAATAGGCACTG 5351
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| ||||||| ||| | | |||||| | ||||||| || ||||| |
Sbjct 5352 CCTGAAAACAGAGGTGTTTCAAGAGGAGGCTGTAATTTGTCTGTCCCTGTGTTTGTCAGT 5411
Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593
|||| | || || | | || | ||| ||||||| | | ||| ||| | |
Sbjct 5412 TTTCCAT-TA--ACAATG-GTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 5467
Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653
| || || ||||| |||| || || | ||| ||| | || || || ||
Sbjct 5468 TTTCTCAGTTTCTAGGTTGTTTTCTCCGTTTAACGACTTGAGCGTCCTGACAATTTCCAG 5527
Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713
||||| |||| ||||| || | || || ||||| || | || ||||| | | ||
Sbjct 5528 GTTGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACT 5587
Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
| || ||| || ||||| | |||||| ||||| ||||| || ||||||||||| || ||
Sbjct 5588 CATTCGGTAGAGGTCCTGCATACAGTTGAGATCCGCCTGAACCCGACTCCACGATGCATA 5647
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
|||||| |||||| || | |||| |||||||| || |||||| || | || || ||
Sbjct 5648 CACGACAGTCTCCAGCCGACTGGCCACAAAGACGTTACTGAAACAGGATGCAATGCCAAT 5707
Query 162834 CACGGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890
||| | ||| | || ||| || | ||| | || || || | ||| || | |||
Sbjct 5708 CACCG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATT 5764
Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950
|||||| |||||||||||||| | || || | ||| || || || || || |||||
Sbjct 5765 CTGAGGCATGTAGATGGCCCTCAAGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCAC 5824
Query 162951 GATAGAATACGCTATGGGGAACT 162973
|| ||||| ||||| || ||||
Sbjct 5825 TATGGAATATGCTATTGGAAACT 5847
>seq28486
Length=29240
Score = 167 bits (184), Expect = 3e-36
Identities = 230/321 (72%), Gaps = 2/321 (1%)
Strand=Plus/Plus
Query 171772 ATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACA 171831
|||||||| || |||| || || | | || || || ||||| ||||| || | ||
Sbjct 19372 ATAGAGTG--AGGCAGGCTTTTCCTAAGACATTCCCAGAACCAAAGGTATTGAAGAGGCA 19429
Query 171832 CATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAG 171891
|||| || || ||||||| |||||| ||||| || || | || || || |||
Sbjct 19430 TTGGTAACATCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAG 19489
Query 171892 TCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATT 171951
||| || | || ||||| | | |||||| || | |||||||| |||||||| ||
Sbjct 19490 TCCCAGCTCAGTGATGTTTATCTTGTCCTTATAGGCTGGCTGGACCACAACACCATGGGA 19549
Query 171952 CTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTAT 172011
|| |||||| ||| |||||||||| ||||| | |||||| || |||||||| || || |
Sbjct 19550 CTTGCTGAAGGTGACCATGTTTTCTGGGCTAGCAGCCTTGATTTTCTGCCATGTCACAAC 19609
Query 172012 TAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTC 172071
|| ||||| | | ||| |||||||||| ||| |||||||||||||||| | |
Sbjct 19610 CAAGACTTCCTGGGAAGTTCCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTT 19669
Query 172072 CCTTTCGTCTTGCGTTACCAC 172092
|||| ||||| || |||||
Sbjct 19670 TTTTTCATCTTGAGTCACCAC 19690
Score = 129 bits (142), Expect = 7e-25
Identities = 177/247 (72%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|||||||| |||| | || |||||||| | ||| | || | ||| |||||||| |
Sbjct 16885 ACAGTTTGCCTGAAGCTGGTCACAGTCCCTAGGTGCAGCACCTGGCAGATCACCTCTT-- 16942
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
||||||| ||||| || || ||||| || || || | || || |||||||| |||||
Sbjct 16943 -TTCCCACCTGACTCTTGGGGTCTTTGACATGGAGGACACTGGTGACAGATGTGGTCCCA 17001
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
|| ||||| || | | |||||| || || ||||| || || | || ||||| |
Sbjct 17002 TTGGGATGTGAAAGAATCTCAGTACTGTTGTCCATTCCTGACCCAGAGACCTTCCAGGAG 17061
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742
|| ||||| ||||| | ||| | ||||||||||| || |||| ||||| |||||
Sbjct 17062 ATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAAT 17121
Query 171743 TCATAGT 171749
| |||||
Sbjct 17122 TTATAGT 17128
>seq126506
Length=11932
Score = 91.5 bits (100), Expect = 2e-13
Identities = 225/336 (67%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | |||||||| || || || ||| | | ||||||
Sbjct 7812 ACCATCTCGGCATTGGTCTTCATAGGAAAGTCTGTTCCACATGTATTCAGGAAGTATTTC 7871
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | ||||| || | | || || | | ||||||||| || ||||| || |||
Sbjct 7872 CA--TGGCACTGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCGAA 7929
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || || || || | ||||| || |||| | |||||||| ||| || |
Sbjct 7930 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCATG 7989
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
||| || || | || ||| | ||| | | || | ||| ||| ||||| ||
Sbjct 7990 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACGTGGAC 8047
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
|| |||| ||||||||||| || | || ||||| | || || || | || |||||
Sbjct 8048 ACAATATATGTTCTGAGGGGCATACACAGCTCTCAGCAGCCTTTCAAAATTTTCAATCTT 8107
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
| || ||||| ||||| | || || ||||| ||
Sbjct 8108 CTCATGGACCACCATAGAGAATGCAATAGGGAAGTC 8143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577271520800000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |