Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq69878 235 6e-57 seq28486 167 3e-36 seq126506 91.5 2e-13 >seq69878 Length=27291 Score = 235 bits (260), Expect = 6e-57 Identities = 612/923 (66%), Gaps = 19/923 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | | || ||| || | |||||||| || || | ||| || Sbjct 4936 CCAGGGCTTTATGCCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATATCTG 4995 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| ||| || ||| ||||| || | || || | Sbjct 4996 TGTCAAACTTATTAGCAAACAAGTGGTGC---TTGCGCAACATCCAGTTCAAGTCACCTG 5052 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || || |||||||| || ||||| || || ||||| ||||| || |||| || | Sbjct 5053 CTCCAAAAACACACACGGAGCGTACGTGGACACCACTGCAGGGCGGGTAGGGGGCGCCCT 5112 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| || ||||||| || || |||||||||| Sbjct 5113 TGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGG 5172 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | || || || | || | ||||| | | Sbjct 5173 ACATGTCATACTTATGG-CTTAGGGACAGTGAGCCTGGGACTTCAGGGATCCTCTGAATA 5231 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || ||||| || || || || || | ||||||||| |||| | Sbjct 5232 GTGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGG 5291 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | ||| | || || || ||| | || | ||| || || || Sbjct 5292 ATTTTTTCATTCTCTAGCACATACTCCACATAATTCCTACTGACCACAAAATAGGCACTG 5351 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | |||||| | ||||||| || ||||| | Sbjct 5352 CCTGAAAACAGAGGTGTTTCAAGAGGAGGCTGTAATTTGTCTGTCCCTGTGTTTGTCAGT 5411 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || || | | || | ||| ||||||| | | ||| ||| | | Sbjct 5412 TTTCCAT-TA--ACAATG-GTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 5467 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | || || ||||| |||| || || | ||| ||| | || || || || Sbjct 5468 TTTCTCAGTTTCTAGGTTGTTTTCTCCGTTTAACGACTTGAGCGTCCTGACAATTTCCAG 5527 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| ||||| || | || || ||||| || | || ||||| | | || Sbjct 5528 GTTGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACT 5587 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | || ||| || ||||| | |||||| ||||| ||||| || ||||||||||| || || Sbjct 5588 CATTCGGTAGAGGTCCTGCATACAGTTGAGATCCGCCTGAACCCGACTCCACGATGCATA 5647 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 |||||| |||||| || | |||| |||||||| || |||||| || | || || || Sbjct 5648 CACGACAGTCTCCAGCCGACTGGCCACAAAGACGTTACTGAAACAGGATGCAATGCCAAT 5707 Query 162834 CACGGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| | ||| | || ||| || | ||| | || || || | ||| || | ||| Sbjct 5708 CACCG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATT 5764 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 5765 CTGAGGCATGTAGATGGCCCTCAAGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCAC 5824 Query 162951 GATAGAATACGCTATGGGGAACT 162973 || ||||| ||||| || |||| Sbjct 5825 TATGGAATATGCTATTGGAAACT 5847 >seq28486 Length=29240 Score = 167 bits (184), Expect = 3e-36 Identities = 230/321 (72%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 171772 ATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACA 171831 |||||||| || |||| || || | | || || || ||||| ||||| || | || Sbjct 19372 ATAGAGTG--AGGCAGGCTTTTCCTAAGACATTCCCAGAACCAAAGGTATTGAAGAGGCA 19429 Query 171832 CATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAG 171891 |||| || || ||||||| |||||| ||||| || || | || || || ||| Sbjct 19430 TTGGTAACATCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAG 19489 Query 171892 TCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATT 171951 ||| || | || ||||| | | |||||| || | |||||||| |||||||| || Sbjct 19490 TCCCAGCTCAGTGATGTTTATCTTGTCCTTATAGGCTGGCTGGACCACAACACCATGGGA 19549 Query 171952 CTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTAT 172011 || |||||| ||| |||||||||| ||||| | |||||| || |||||||| || || | Sbjct 19550 CTTGCTGAAGGTGACCATGTTTTCTGGGCTAGCAGCCTTGATTTTCTGCCATGTCACAAC 19609 Query 172012 TAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTC 172071 || ||||| | | ||| |||||||||| ||| |||||||||||||||| | | Sbjct 19610 CAAGACTTCCTGGGAAGTTCCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTT 19669 Query 172072 CCTTTCGTCTTGCGTTACCAC 172092 |||| ||||| || ||||| Sbjct 19670 TTTTTCATCTTGAGTCACCAC 19690 Score = 129 bits (142), Expect = 7e-25 Identities = 177/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| | || |||||||| | ||| | || | ||| |||||||| | Sbjct 16885 ACAGTTTGCCTGAAGCTGGTCACAGTCCCTAGGTGCAGCACCTGGCAGATCACCTCTT-- 16942 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 ||||||| ||||| || || ||||| || || || | || || |||||||| ||||| Sbjct 16943 -TTCCCACCTGACTCTTGGGGTCTTTGACATGGAGGACACTGGTGACAGATGTGGTCCCA 17001 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || ||||| || | | |||||| || || ||||| || || | || ||||| | Sbjct 17002 TTGGGATGTGAAAGAATCTCAGTACTGTTGTCCATTCCTGACCCAGAGACCTTCCAGGAG 17061 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || ||||| ||||| | ||| | ||||||||||| || |||| ||||| ||||| Sbjct 17062 ATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAAT 17121 Query 171743 TCATAGT 171749 | ||||| Sbjct 17122 TTATAGT 17128 >seq126506 Length=11932 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | |||||| Sbjct 7812 ACCATCTCGGCATTGGTCTTCATAGGAAAGTCTGTTCCACATGTATTCAGGAAGTATTTC 7871 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||||| || | | || || | | ||||||||| || ||||| || ||| Sbjct 7872 CA--TGGCACTGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCGAA 7929 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| || | Sbjct 7930 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCATG 7989 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| ||||| || Sbjct 7990 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACGTGGAC 8047 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 || |||| ||||||||||| || | || ||||| | || || || | || ||||| Sbjct 8048 ACAATATATGTTCTGAGGGGCATACACAGCTCTCAGCAGCCTTTCAAAATTTTCAATCTT 8107 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| | || || ||||| || Sbjct 8108 CTCATGGACCACCATAGAGAATGCAATAGGGAAGTC 8143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577271520800000