Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 122 6e-23
seq74389 95.1 8e-15
>seq63810
Length=35167
Score = 122 bits (134), Expect = 6e-23
Identities = 171/236 (72%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| ||||| | ||| | |||| || |||||| ||| || || |||||||| |||||
Sbjct 27915 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27974
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || |||| ||||| |||||||| ||||| |||||||| || | ||
Sbjct 27975 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 28034
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || |||||||| || || || | ||| || | |||||| || | |||||
Sbjct 28035 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 28093
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT-TGGT 33756
|| | ||||| || ||||| || || || || |||||||||||||| || ||||
Sbjct 28094 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATTGTCTGGT 28149
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| ||||| | ||| | |||| || |||||| |||||| || |||||||| |||||
Sbjct 27687 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 27746
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || |||| ||||| |||||||| ||||| |||||||| || | ||
Sbjct 27747 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27806
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || |||||||| || || || | ||| || | |||||| || | |||||
Sbjct 27807 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 27865
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || ||||| || || || || || |||||||||||
Sbjct 27866 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| ||||| | ||| | |||| || |||||| ||| || || |||||||| |||||
Sbjct 27459 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27518
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || |||| ||||| |||||||| ||||| |||||||| || | ||
Sbjct 27519 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27578
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || |||||||| || || || | ||| || | |||||| || | |||||
Sbjct 27579 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 27637
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || ||||| || || || || || |||||||||||
Sbjct 27638 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | |||| ||| |||||| ||| || || |||||||| ||||
Sbjct 27229 CACCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 27288
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || |||||| | || |||| ||||| |||||||| ||||| | |||||| || | |
Sbjct 27289 ACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGG 27348
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| || |||||||| || || || | ||| || | |||||| || | |||
Sbjct 27349 GGCTGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCC 27407
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| | | ||| || | || || || |||||||||||
Sbjct 27408 ACCTCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457
>seq74389
Length=16610
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
|||||| || |||||| |||||| || || || || || ||||| ||||| | || ||
Sbjct 10476 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 10417
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| ||||| ||||||||||||| | ||| ||| || | || | || || ||||
Sbjct 10416 CATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTG 10357
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
||||| | || |||| || | ||||| || | || | |||| ||||| || |
Sbjct 10356 GATTTT-AGCTTTGACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCT 10298
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || || || || ||||||||||||||
Sbjct 10297 TGCCCGTCAAGGTCTTCACAAAGATCTGCAT 10267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328061024160000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |