Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq33159 118 3e-21 seq157463 114 3e-20 seq5492 111 4e-19 seq57509 104 6e-17 seq12448 102 2e-16 seq90327 95.1 3e-14 seq63810 95.1 3e-14 seq78565 87.8 4e-12 >seq33159 Length=15523 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| | || || ||| || || Sbjct 2315 CAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCAGAT 2256 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||||| ||||| || || || |||| |||| || || || Sbjct 2255 ACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGATCTGTAA 2196 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || || ||||| ||||||||||| | ||| || | || |||||| | Sbjct 2195 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTACAACATT 2136 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| ||||| ||||||||||| Sbjct 2135 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 2098 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| || ||| Sbjct 2098 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTG 2157 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| ||||| || || ||||| || Sbjct 2158 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 2192 >seq157463 Length=7943 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||| || || || || || |||||| | || || ||| || | ||| | ||| Sbjct 545 AAAATCCTTACTGGGAAGACCATCACTCTTGAGGTTGAACCCTCGGGTACAATAGAAAAT 486 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||| || || || ||||||||| || | ||||||| ||||| Sbjct 485 ATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGCTCAGCAAAGACCGATCTTT 426 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| | |||||| | || |||||| | || |||||||| Sbjct 425 GCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTACAACATTCAAAAAGAGTCC 366 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 365 ACTCTTCATCTTGTGTTGAGACTTCG 340 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| |||||||| || | || ||||| | |||||| Sbjct 340 CGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAAAGTA 399 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||||||||| || || ||||| | | ||| ||| Sbjct 400 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGA 444 >seq5492 Length=9153 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| | || ||| ||| Sbjct 3617 AAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTTGGATACAAAAGAAAAT 3676 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 3677 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 3736 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||| | |||||| | || |||||| | || || ||||| Sbjct 3737 GCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGACTACAACATTCAAAAGGAGTCC 3796 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 3797 ACTCTTCATCTTGTGTTGAGACTTCG 3822 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 3822 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 3763 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| | ||||| || || ||||| || | ||| ||| Sbjct 3762 CACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 3718 >seq57509 Length=13326 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || || || |||||| | | || ||| || || ||| || Sbjct 2528 CAAAACCCTTACTGGGAAGACCATCACTCTCAAGGTTGAACCCTCGGATACAACAGATAA 2469 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| | ||| || || || ||||||||| | || || | |||||| ||||| Sbjct 2468 TGTAAAGGCCAGGATCCAGGATAAGGAAGGAATTCTTCCTGATCAGCGAAGACTGATCTT 2409 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||| | |||||||||| | |||||| | |||||| | || |||||||| Sbjct 2408 TGCTGGCAAGTAACCGGAAGATGGATGTACTTTGAC----TACAACATTCATAAAGAGTC 2353 Query 206364 TACTCTTCACCTTGTTTTGAGACTT 206388 ||||||||| ||||| ||||||||| Sbjct 2352 TACTCTTCATCTTGTATTGAGACTT 2328 >seq12448 Length=17785 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| || || ||| | ||| Sbjct 3527 AAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACAATAGAAAAT 3468 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| || || |||||||||||| || | |||||||| ||||| Sbjct 3467 GTAAAAGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTAATCAGCAAAGACTGATCTTT 3408 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||| || | || || ||| | || | ||||| Sbjct 3407 GCAGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAAAACATTCAACAGGAGTCC 3348 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 || ||||| ||||| ||||||||| Sbjct 3347 ACCCTTCATCTTGTGTTGAGACTT 3324 >seq90327 Length=63722 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206186 AAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAG 206245 |||| | || || || || |||||| | || || ||| || || ||| ||| | Sbjct 54501 AAACCCATACCGGGAAGACCATCACTCTTGAGGTTGAACCCTCAGATACAAGAGAAAATG 54560 Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 |||| ||||| || || || ||||||||| || || |||||||| | ||| | Sbjct 54561 TAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGACCTTTG 54620 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || ||||| ||||||||||| | || ||| | || |||||| | | || ||||| | Sbjct 54621 CTGGCAAGCAACTGGAAGATGGATGTACCTTGTCTGACTACAACATTTAAAAGGAGTCCA 54680 Query 206366 CTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| || |||||| |||||| Sbjct 54681 CTCTTCATCTGATTTTGACACTTCG 54705 >seq63810 Length=35167 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 27889 ACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCC 27830 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || | | ||||| ||||| || Sbjct 27829 AAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGCAGCGGTTGATCTTTGCCGGCAAA 27770 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||||||| | ||| || |||| |||||| ||||||||||||| ||||| ||| Sbjct 27769 CAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCCACTCTGCAC 27710 Query 206374 CTTGT 206378 || || Sbjct 27709 CTGGT 27705 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| |||| ||||| |||| Sbjct 28138 CAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGAC 28079 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| ||||| || || || ||| || Sbjct 28078 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGCAG 28019 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| ||||| || ||| ||||||||||| | ||| || |||| |||||| || Sbjct 28018 CGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATC 27959 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 27958 CAGAAGGAGTCCACTCTGCACCTGGT 27933 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 27661 ACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCC 27602 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || | | ||||| ||||| || Sbjct 27601 AAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGCAGCGGTTGATCTTTGCCGGCAAA 27542 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||||||| | ||| || |||| |||||| ||||||| ||||| ||||| ||| Sbjct 27541 CAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCAC 27482 Query 206374 CTTGT 206378 || || Sbjct 27481 CTGGT 27477 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||| ||||||||||||| || ||||| | || ||| | |||||||||| Sbjct 27705 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27764 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| || ||||| ||||| | ||| || || Sbjct 27765 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTG 27796 >seq78565 Length=14118 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 ||| || || || ||||||||| | || |||| ||| ||||| || |||||||| Sbjct 380 GATCCAGGATAAGGAAGGAATTCCTCTTGATCAGCAAAAACTGATCTTTGCTGGAAAGCA 321 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 ||||||||||| | ||||| | || |||||| | | || ||||| | |||||| || Sbjct 320 ACTGGAAGATGGACGCGCTTTGTCTGACTACAACATTCCAAAGGAGTCCATTCTTCATCT 261 Query 206376 TGTTTTGAGACTT 206388 ||| ||||||||| Sbjct 260 TGTGTTGAGACTT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179390496320500