Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq33159 118 3e-21
seq157463 114 3e-20
seq5492 111 4e-19
seq57509 104 6e-17
seq12448 102 2e-16
seq90327 95.1 3e-14
seq63810 95.1 3e-14
seq78565 87.8 4e-12
>seq33159
Length=15523
Score = 118 bits (130), Expect = 3e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || || || ||||| | || || ||| || ||
Sbjct 2315 CAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCAGAT 2256
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| | ||| |||||| ||||| || || || |||| |||| || || ||
Sbjct 2255 ACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGATCTGTAA 2196
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||||| ||||| || || ||||| ||||||||||| | ||| || | || |||||| |
Sbjct 2195 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTACAACATT 2136
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||| |||||||| ||||| |||||||||||
Sbjct 2135 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 2098
Score = 91.5 bits (100), Expect = 3e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| |||||||| ||||| || || | || ||||||| || |||
Sbjct 2098 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTG 2157
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846
| |||||||||||| ||||| || || ||||| ||
Sbjct 2158 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 2192
>seq157463
Length=7943
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|||| || || || || || |||||| | || || ||| || | ||| | |||
Sbjct 545 AAAATCCTTACTGGGAAGACCATCACTCTTGAGGTTGAACCCTCGGGTACAATAGAAAAT 486
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||| |||| || || || ||||||||| || | ||||||| |||||
Sbjct 485 ATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGCTCAGCAAAGACCGATCTTT 426
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| ||||||||||| | |||||| | || |||||| | || ||||||||
Sbjct 425 GCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTACAACATTCAAAAAGAGTCC 366
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| ||||| |||||||||||
Sbjct 365 ACTCTTCATCTTGTGTTGAGACTTCG 340
Score = 100 bits (110), Expect = 7e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| |||||||| |||||||| || | || ||||| | ||||||
Sbjct 340 CGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAAAGTA 399
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| |||||||||||||||||| || || ||||| | | ||| |||
Sbjct 400 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGA 444
>seq5492
Length=9153
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || ||||| | || || ||| | || ||| |||
Sbjct 3617 AAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTTGGATACAAAAGAAAAT 3676
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| || || |||||||| |||||
Sbjct 3677 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 3736
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||| | |||||| | || |||||| | || || |||||
Sbjct 3737 GCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGACTACAACATTCAAAAGGAGTCC 3796
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| ||||| |||||||||||
Sbjct 3797 ACTCTTCATCTTGTGTTGAGACTTCG 3822
Score = 91.5 bits (100), Expect = 3e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| |||||||| ||||| || || | || ||||||| ||||||
Sbjct 3822 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 3763
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||||||||| | ||||| || || ||||| || | ||| |||
Sbjct 3762 CACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 3718
>seq57509
Length=13326
Score = 104 bits (114), Expect = 6e-17
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
|||||| || || || || || |||||| | | || ||| || || ||| ||
Sbjct 2528 CAAAACCCTTACTGGGAAGACCATCACTCTCAAGGTTGAACCCTCGGATACAACAGATAA 2469
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|||||| | ||| || || || ||||||||| | || || | |||||| |||||
Sbjct 2468 TGTAAAGGCCAGGATCCAGGATAAGGAAGGAATTCTTCCTGATCAGCGAAGACTGATCTT 2409
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|| || ||| | |||||||||| | |||||| | |||||| | || ||||||||
Sbjct 2408 TGCTGGCAAGTAACCGGAAGATGGATGTACTTTGAC----TACAACATTCATAAAGAGTC 2353
Query 206364 TACTCTTCACCTTGTTTTGAGACTT 206388
||||||||| ||||| |||||||||
Sbjct 2352 TACTCTTCATCTTGTATTGAGACTT 2328
>seq12448
Length=17785
Score = 102 bits (112), Expect = 2e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || ||||| | || || ||| || || ||| | |||
Sbjct 3527 AAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACAATAGAAAAT 3468
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||| ||||| || || |||||||||||| || | |||||||| |||||
Sbjct 3467 GTAAAAGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTAATCAGCAAAGACTGATCTTT 3408
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | ||| || | || || ||| | || | |||||
Sbjct 3407 GCAGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAAAACATTCAACAGGAGTCC 3348
Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388
|| ||||| ||||| |||||||||
Sbjct 3347 ACCCTTCATCTTGTGTTGAGACTT 3324
>seq90327
Length=63722
Score = 95.1 bits (104), Expect = 3e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 206186 AAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAG 206245
|||| | || || || || |||||| | || || ||| || || ||| ||| |
Sbjct 54501 AAACCCATACCGGGAAGACCATCACTCTTGAGGTTGAACCCTCAGATACAAGAGAAAATG 54560
Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305
|||| ||||| || || || ||||||||| || || |||||||| | ||| |
Sbjct 54561 TAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGACCTTTG 54620
Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365
| || ||||| ||||||||||| | || ||| | || |||||| | | || ||||| |
Sbjct 54621 CTGGCAAGCAACTGGAAGATGGATGTACCTTGTCTGACTACAACATTTAAAAGGAGTCCA 54680
Query 206366 CTCTTCACCTTGTTTTGAGACTTCG 206390
||||||| || |||||| ||||||
Sbjct 54681 CTCTTCATCTGATTTTGACACTTCG 54705
>seq63810
Length=35167
Score = 95.1 bits (104), Expect = 3e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| |||| ||||| |||||| |||| || |||
Sbjct 27889 ACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCC 27830
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| ||||| || || || ||| || | | ||||| ||||| ||
Sbjct 27829 AAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGCAGCGGTTGATCTTTGCCGGCAAA 27770
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| ||||||||||| | ||| || |||| |||||| ||||||||||||| ||||| |||
Sbjct 27769 CAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCCACTCTGCAC 27710
Query 206374 CTTGT 206378
|| ||
Sbjct 27709 CTGGT 27705
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | || || || || ||||| |||| ||||| ||||
Sbjct 28138 CAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGAC 28079
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| ||||| ||||| || || || ||| ||
Sbjct 28078 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGCAG 28019
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||| ||||| || ||| ||||||||||| | ||| || |||| |||||| ||
Sbjct 28018 CGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATC 27959
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| ||||| ||||| ||
Sbjct 27958 CAGAAGGAGTCCACTCTGCACCTGGT 27933
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| |||| ||||| |||||| |||| || |||
Sbjct 27661 ACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCC 27602
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| ||||| || || || ||| || | | ||||| ||||| ||
Sbjct 27601 AAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGCAGCGGTTGATCTTTGCCGGCAAA 27542
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| ||||||||||| | ||| || |||| |||||| ||||||| ||||| ||||| |||
Sbjct 27541 CAGCTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCAC 27482
Query 206374 CTTGT 206378
|| ||
Sbjct 27481 CTGGT 27477
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|| ||||| ||||| ||||||||||||| || ||||| | || ||| | ||||||||||
Sbjct 27705 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27764
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
||||| || ||||| ||||| | ||| || ||
Sbjct 27765 AGCTGTTTGCCGGCAAAGATCAACCGCTGCTG 27796
>seq78565
Length=14118
Score = 87.8 bits (96), Expect = 4e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315
||| || || || ||||||||| | || |||| ||| ||||| || ||||||||
Sbjct 380 GATCCAGGATAAGGAAGGAATTCCTCTTGATCAGCAAAAACTGATCTTTGCTGGAAAGCA 321
Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375
||||||||||| | ||||| | || |||||| | | || ||||| | |||||| ||
Sbjct 320 ACTGGAAGATGGACGCGCTTTGTCTGACTACAACATTCCAAAGGAGTCCATTCTTCATCT 261
Query 206376 TGTTTTGAGACTT 206388
||| |||||||||
Sbjct 260 TGTGTTGAGACTT 248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179390496320500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |