Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq28486 257 2e-63
seq75256 170 2e-37
seq67150 156 5e-33
seq75380 136 5e-27
seq79617 129 7e-25
seq65576 91.5 2e-13
>seq28486
Length=29240
Score = 257 bits (284), Expect = 2e-63
Identities = 247/317 (78%), Gaps = 0/317 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
|||||||| || ||||| | |||||||||||| || || ||| | |||||| |||
Sbjct 19690 GTGGTGACTCAAGATGAAAAAAAGCTGCTGAACACACCTGCTTCCTTACGATGCTCTCTG 19631
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
||||| ||||| || || |||| || ||||||||||||||| | | | |||||
Sbjct 19630 GGAACTTCCCAGGAAGTCTTGGTTGTGACATGGCAGAAAATCAAGGCTGCTAGCCCAGAA 19571
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || || ||||| ||| || || ||||||||||| || ||||||||||||
Sbjct 19570 AACATGGTCACCTTCAGCAAGTCCCATGGTGTTGTGGTCCAGCCAGCCTATAAGGACAAG 19511
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
||||||||||| |||| |||||||| ||||||||||| || || |||||||||||| |
Sbjct 19510 ATAAACATCACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 19451
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| ||||| || ||| | |||||||| || |||||||| |||||||| ||| ||
Sbjct 19450 GAGGATGAGGGATGTTACCAATGCCTCTTCAATACCTTTGGTTCTGGGAATGTCTTAGGA 19391
Query 171372 GTGGCCTGCCTCACCCT 171388
||||||||||| ||
Sbjct 19390 AAAGCCTGCCTCACTCT 19374
Score = 242 bits (268), Expect = 4e-59
Identities = 220/277 (79%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
|| |||||||| || || || | |||||||| ||||| |||||||| || ||||| ||
Sbjct 17150 GTACAGCCCACAGTATTCCTCTACTATAAATTCTTTGAAGACCACCTAAATATCACTTGC 17091
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||||||||||||||| | ||| ||| | |||||| | || ||||||| ||| ||
Sbjct 17090 TCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGAATGGAC 17031
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
||||||| ||| ||||||| ||| | ||||| || || ||||| |||||||| |||||
Sbjct 17030 AACAGTACTGAGATTCTTTCACATCCCAATGGGACCACATCTGTCACCAGTGTCCTCCAT 16971
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
|| |||||||||||||||||| ||||||| ||||| |||||||| ||| |||||| ||
Sbjct 16970 GTCAAAGACCCCAAGAGTCAGGTGGGAAAAGAGGTGATCTGCCAGGTGCTGCACCTAGGG 16911
Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
| ||| || | ||| ||| ||||||| | ||| ||||
Sbjct 16910 ACTGTGACCAGCTTCAGGCAAACTGTGAACAAAGGTA 16874
>seq75256
Length=16458
Score = 170 bits (188), Expect = 2e-37
Identities = 144/177 (81%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | ||||||||||||||| ||||||||||| ||||||||
Sbjct 6370 CTTCAGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 6429
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
|| ||||||||||||||||| | |||||||| ||||||||||| || ||||| ||||
Sbjct 6430 AGGCACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTT 6489
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158
||||||| |||||||| ||| |||||||| || || |||||| ||||| ||
Sbjct 6490 CACCACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAGAGGCAGATC 6546
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342
|||||||| ||||||||||| ||||| || ||||| || | || || | |||||
Sbjct 9838 GCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGTTG 9897
Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402
||||| ||| | | || || || ||||||||| ||| |||||||| | |||||||
Sbjct 9898 GAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATTCTCACTCCC 9957
Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435
|||| || || || |||| | ||||| |||
Sbjct 9958 TTGGATGACAGTTCTTTAGCATTTGTGGATCCC 9990
>seq67150
Length=13541
Score = 156 bits (172), Expect = 5e-33
Identities = 528/819 (64%), Gaps = 29/819 (4%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||| | |||||||| |||| || | ||||| | |||||| | | ||||||
Sbjct 9203 GTACGCCCTGGTGTTCAGCGTTGGTCTCCTGGGCAACGTGCTGGTGGTGGTGATCCTCAC 9144
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||| |||| | | || | || ||||||||||||| |||| |||| ||||| || |||
Sbjct 9143 AAAATACAGGCGCCTTCGCATTATGACCAACATCTACCTGCTCAATTTGGCCATTTCTGA 9084
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
| |||| | | |||||||| ||||| |||||||||| | || | |||| ||
Sbjct 9083 CTTGCTCTTTCTATTCACCCTGCCCTTCTGGATTCACTACG--TCAAGTGGAA----TGA 9030
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
||||| | ||| |||||||||| | | || | | || ||| ||||
Sbjct 9029 GTGGGTTTTTGGCCATTGCATGTGTAAGCTGCTCTCAGGGTTGTATTACATGGGCTTGTA 8970
Query 8850 CAGCGAAGTCCTGTTT-ATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908
| | || | ||| ||| ||||||||| |||| | ||| ||||||| || | || |||
Sbjct 8969 CGGGGA-GACCTTTTTCATCATCCTGCTGACGATAGACCGGTATCTGGCCATCGTCCACG 8911
Query 8909 CGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCT 8968
| ||| | | || |||||| || | | || ||| | ||| |||| |||
Sbjct 8910 CTGTGTTTGCCCTGCGGGTCCGGACCGTCACTTTTGGTATCATAAGCAGTGTCCTCACCT 8851
Query 8969 GGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCA 9028
|| ||||| | | ||| | || | || || |||||||| |||| | | | | |
Sbjct 8850 GGGCCCTGGCAGGGCTGGCAGCCCTCCCTGAATTTATCTTCCATGAGTTCCAAGAGGAGT 8791
Query 9029 CAGGCAAGGGGGTCTGCCAAGCCTCCTACACAGA------------CTTTTGGAAGGGGG 9076
| | |||| ||||| | ||| |||| | |||||| |
Sbjct 8790 CTGAACAGGGTTTCTGCAGTTCACTTTACCCAGAGGACGAAGAGGACGCCTGGAAGCGTT 8731
Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136
|| | | | || |||| | | |||| |||||| |||| || ||||| |||
Sbjct 8730 TTCACGCTGTGAGGATGAATGTCTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCT 8671
Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAACCTGCACG 9196
||||| |||||| || |||| ||||| || || ||| | ||| | |
Sbjct 8670 GCTACGCCGGAATCATTAAAACCCTCATCAAGTGCCCCAGTAGG---AAAAAGTATAAGG 8614
Query 9197 CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACG 9256
|| || ||||||||| ||||| ||||| | | ||| | || ||| || ||||||
Sbjct 8613 CCATCCGGCTCATTTTTATCATCATGGTGGTCTTTTTCATTTTCTGGGGACCTTACAACC 8554
Query 9257 TCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGGC 9316
| | ||| || | | | || ||| || | | |||| | | |||||||| ||||
Sbjct 8553 TGGTTCTCCTTCTCTCCGCTTATCAAACGGTCTTCTTTGAGACCGACTGTGA---GCGGA 8497
Query 9317 GCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373
||| | |||| ||||| | ||||| | ||| ||||||||| ||| ||||||||||
Sbjct 8496 GCAAACAGCTGGATGTGGCCATGCTGGTGACGGAGGTGATCGCCTACACACACTGCTGCG 8437
Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
||||||| || |||||||| ||||| || || | |||||
Sbjct 8436 TCAACCCTGTGATCTACGCCTTTGTCGGAGAGAGGTTCC 8398
>seq75380
Length=28474
Score = 136 bits (150), Expect = 5e-27
Identities = 130/167 (78%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 11050 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 11109
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||| |||| | | ||| || || ||| |||| || ||||
Sbjct 11110 TGCCCCAGGCTGAG------AGCGAG------GACCCAGAGATCAAGAAGCACGTGAACT 11157
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| || |||||||| || ||||| || || ||||||| |||| |||
Sbjct 11158 CCCTCGGGGAAAACCTGAAGACGCTCAGGCTGAGGCTCAGGCGCTGT 11204
Score = 98.7 bits (108), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 178165 CtttttttCAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAG 178224
|||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||| |
Sbjct 10700 CTTTTTAGCAAATGAAGGACCAGTTGGACAACATGTTGTTGAATGGGTCCTTGCTGGAGG 10759
Query 178225 ACTTTAAGG 178233
|||||||||
Sbjct 10760 ACTTTAAGG 10768
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || || |||||||| ||||||||||| ||||| || || |||||||
Sbjct 13308 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTCGATATCTTCATCAACTACA 13367
Query 178522 TAGAAGCTTACATGACA 178538
||||||| |||||||||
Sbjct 13368 TAGAAGCCTACATGACA 13384
>seq79617
Length=76219
Score = 129 bits (142), Expect = 7e-25
Identities = 203/288 (70%), Gaps = 6/288 (2%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| ||||| ||| | ||||||| | |||||| ||||||| |||| ||||| ||
Sbjct 50081 GTACTCCCTGGTCTTTATTGTTGGGCTGGTCGGCAATATCCTGGTGGTCCTGGTCCTTAT 50022
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
| |||| ||||||||||| |||||||| ||||| ||| ||||||||||| | |||
Sbjct 50021 GCAATACAGGAGGCTCAGGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATCTCTGA 49962
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
|||||| | | ||||| || ||||| |||||| || | || || | || || |||
Sbjct 49961 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGAC-TACAATCTGAAGG-ACAACTGG 49904
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
||| || || |||||| ||| | | ||| |||| || | | |||
Sbjct 49903 GTG----TTCGGTAACGGCATGTGCAAGCTGCTCTCGGGGCTTTATTACATAGGCTTGTT 49848
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897
|||||| || | || || |||||| |||| | |||||||| || ||
Sbjct 49847 CAGCGAGATCTTTTTCATGATCCTGCTGACCGTCGACAGGTACCTGGC 49800
>seq65576
Length=5110
Score = 91.5 bits (100), Expect = 2e-13
Identities = 122/169 (72%), Gaps = 3/169 (2%)
Strand=Plus/Plus
Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967
|||||||||||||| ||||| | || ||||| | ||| || || | || |||||
Sbjct 1775 AGCTGAATTTTCAGTGGCTCAGTGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGT 1834
Query 146968 ACAAAGTCC---CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAG 147024
| ||||| || ||||| || | || | | | || | ||||||||||||||| |||
Sbjct 1835 ATAAAGTTATTACCTGGCTTCAGATCCGTGATGAGTGCAATCATGTAGGTGAGCAGGGAG 1894
Query 147025 TAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCT 147073
|||||||| |||||||| || || | ||||| || || | ||| |||
Sbjct 1895 TAGCTGGCAATGTTGAATGGCACACATAGGCCTATATCTGCTGACGTCT 1943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582317377200000
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