Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq28486 257 2e-63 seq75256 170 2e-37 seq67150 156 5e-33 seq75380 136 5e-27 seq79617 129 7e-25 seq65576 91.5 2e-13 >seq28486 Length=29240 Score = 257 bits (284), Expect = 2e-63 Identities = 247/317 (78%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| || ||||| | |||||||||||| || || ||| | |||||| ||| Sbjct 19690 GTGGTGACTCAAGATGAAAAAAAGCTGCTGAACACACCTGCTTCCTTACGATGCTCTCTG 19631 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 ||||| ||||| || || |||| || ||||||||||||||| | | | ||||| Sbjct 19630 GGAACTTCCCAGGAAGTCTTGGTTGTGACATGGCAGAAAATCAAGGCTGCTAGCCCAGAA 19571 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| ||| || || ||||||||||| || |||||||||||| Sbjct 19570 AACATGGTCACCTTCAGCAAGTCCCATGGTGTTGTGGTCCAGCCAGCCTATAAGGACAAG 19511 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| |||| |||||||| ||||||||||| || || |||||||||||| | Sbjct 19510 ATAAACATCACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 19451 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| ||||| || ||| | |||||||| || |||||||| |||||||| ||| || Sbjct 19450 GAGGATGAGGGATGTTACCAATGCCTCTTCAATACCTTTGGTTCTGGGAATGTCTTAGGA 19391 Query 171372 GTGGCCTGCCTCACCCT 171388 ||||||||||| || Sbjct 19390 AAAGCCTGCCTCACTCT 19374 Score = 242 bits (268), Expect = 4e-59 Identities = 220/277 (79%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || | |||||||| ||||| |||||||| || ||||| || Sbjct 17150 GTACAGCCCACAGTATTCCTCTACTATAAATTCTTTGAAGACCACCTAAATATCACTTGC 17091 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||||||||| | ||| ||| | |||||| | || ||||||| ||| || Sbjct 17090 TCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGAATGGAC 17031 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| ||||||| ||| | ||||| || || ||||| |||||||| ||||| Sbjct 17030 AACAGTACTGAGATTCTTTCACATCCCAATGGGACCACATCTGTCACCAGTGTCCTCCAT 16971 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || |||||||||||||||||| ||||||| ||||| |||||||| ||| |||||| || Sbjct 16970 GTCAAAGACCCCAAGAGTCAGGTGGGAAAAGAGGTGATCTGCCAGGTGCTGCACCTAGGG 16911 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || | ||| ||| ||||||| | ||| |||| Sbjct 16910 ACTGTGACCAGCTTCAGGCAAACTGTGAACAAAGGTA 16874 >seq75256 Length=16458 Score = 170 bits (188), Expect = 2e-37 Identities = 144/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| ||||||||||| |||||||| Sbjct 6370 CTTCAGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 6429 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||||||||||||||| | |||||||| ||||||||||| || ||||| |||| Sbjct 6430 AGGCACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTT 6489 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 ||||||| |||||||| ||| |||||||| || || |||||| ||||| || Sbjct 6490 CACCACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAGAGGCAGATC 6546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||| ||||| || ||||| || | || || | ||||| Sbjct 9838 GCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGTTG 9897 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | || || || ||||||||| ||| |||||||| | ||||||| Sbjct 9898 GAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATTCTCACTCCC 9957 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || || || |||| | ||||| ||| Sbjct 9958 TTGGATGACAGTTCTTTAGCATTTGTGGATCCC 9990 >seq67150 Length=13541 Score = 156 bits (172), Expect = 5e-33 Identities = 528/819 (64%), Gaps = 29/819 (4%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||| | |||||||| |||| || | ||||| | |||||| | | |||||| Sbjct 9203 GTACGCCCTGGTGTTCAGCGTTGGTCTCCTGGGCAACGTGCTGGTGGTGGTGATCCTCAC 9144 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| | | || | || ||||||||||||| |||| |||| ||||| || ||| Sbjct 9143 AAAATACAGGCGCCTTCGCATTATGACCAACATCTACCTGCTCAATTTGGCCATTTCTGA 9084 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | |||||||| ||||| |||||||||| | || | |||| || Sbjct 9083 CTTGCTCTTTCTATTCACCCTGCCCTTCTGGATTCACTACG--TCAAGTGGAA----TGA 9030 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | ||| |||||||||| | | || | | || ||| |||| Sbjct 9029 GTGGGTTTTTGGCCATTGCATGTGTAAGCTGCTCTCAGGGTTGTATTACATGGGCTTGTA 8970 Query 8850 CAGCGAAGTCCTGTTT-ATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908 | | || | ||| ||| ||||||||| |||| | ||| ||||||| || | || ||| Sbjct 8969 CGGGGA-GACCTTTTTCATCATCCTGCTGACGATAGACCGGTATCTGGCCATCGTCCACG 8911 Query 8909 CGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCT 8968 | ||| | | || |||||| || | | || ||| | ||| |||| ||| Sbjct 8910 CTGTGTTTGCCCTGCGGGTCCGGACCGTCACTTTTGGTATCATAAGCAGTGTCCTCACCT 8851 Query 8969 GGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCA 9028 || ||||| | | ||| | || | || || |||||||| |||| | | | | | Sbjct 8850 GGGCCCTGGCAGGGCTGGCAGCCCTCCCTGAATTTATCTTCCATGAGTTCCAAGAGGAGT 8791 Query 9029 CAGGCAAGGGGGTCTGCCAAGCCTCCTACACAGA------------CTTTTGGAAGGGGG 9076 | | |||| ||||| | ||| |||| | |||||| | Sbjct 8790 CTGAACAGGGTTTCTGCAGTTCACTTTACCCAGAGGACGAAGAGGACGCCTGGAAGCGTT 8731 Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136 || | | | || |||| | | |||| |||||| |||| || ||||| ||| Sbjct 8730 TTCACGCTGTGAGGATGAATGTCTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCT 8671 Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAACCTGCACG 9196 ||||| |||||| || |||| ||||| || || ||| | ||| | | Sbjct 8670 GCTACGCCGGAATCATTAAAACCCTCATCAAGTGCCCCAGTAGG---AAAAAGTATAAGG 8614 Query 9197 CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACG 9256 || || ||||||||| ||||| ||||| | | ||| | || ||| || |||||| Sbjct 8613 CCATCCGGCTCATTTTTATCATCATGGTGGTCTTTTTCATTTTCTGGGGACCTTACAACC 8554 Query 9257 TCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGGC 9316 | | ||| || | | | || ||| || | | |||| | | |||||||| |||| Sbjct 8553 TGGTTCTCCTTCTCTCCGCTTATCAAACGGTCTTCTTTGAGACCGACTGTGA---GCGGA 8497 Query 9317 GCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373 ||| | |||| ||||| | ||||| | ||| ||||||||| ||| |||||||||| Sbjct 8496 GCAAACAGCTGGATGTGGCCATGCTGGTGACGGAGGTGATCGCCTACACACACTGCTGCG 8437 Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| || |||||||| ||||| || || | ||||| Sbjct 8436 TCAACCCTGTGATCTACGCCTTTGTCGGAGAGAGGTTCC 8398 >seq75380 Length=28474 Score = 136 bits (150), Expect = 5e-27 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 11050 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 11109 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||| |||| | | ||| || || ||| |||| || |||| Sbjct 11110 TGCCCCAGGCTGAG------AGCGAG------GACCCAGAGATCAAGAAGCACGTGAACT 11157 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | || |||||||| || ||||| || || ||||||| |||| ||| Sbjct 11158 CCCTCGGGGAAAACCTGAAGACGCTCAGGCTGAGGCTCAGGCGCTGT 11204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 178165 CtttttttCAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAG 178224 |||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||| | Sbjct 10700 CTTTTTAGCAAATGAAGGACCAGTTGGACAACATGTTGTTGAATGGGTCCTTGCTGGAGG 10759 Query 178225 ACTTTAAGG 178233 ||||||||| Sbjct 10760 ACTTTAAGG 10768 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| ||||||||||| ||||| || || ||||||| Sbjct 13308 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTCGATATCTTCATCAACTACA 13367 Query 178522 TAGAAGCTTACATGACA 178538 ||||||| ||||||||| Sbjct 13368 TAGAAGCCTACATGACA 13384 >seq79617 Length=76219 Score = 129 bits (142), Expect = 7e-25 Identities = 203/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | ||||||| | |||||| ||||||| |||| ||||| || Sbjct 50081 GTACTCCCTGGTCTTTATTGTTGGGCTGGTCGGCAATATCCTGGTGGTCCTGGTCCTTAT 50022 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||| ||||||||||| |||||||| ||||| ||| ||||||||||| | ||| Sbjct 50021 GCAATACAGGAGGCTCAGGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATCTCTGA 49962 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| || ||||| |||||| || | || || | || || ||| Sbjct 49961 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGAC-TACAATCTGAAGG-ACAACTGG 49904 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| || || |||||| ||| | | ||| |||| || | | ||| Sbjct 49903 GTG----TTCGGTAACGGCATGTGCAAGCTGCTCTCGGGGCTTTATTACATAGGCTTGTT 49848 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 |||||| || | || || |||||| |||| | |||||||| || || Sbjct 49847 CAGCGAGATCTTTTTCATGATCCTGCTGACCGTCGACAGGTACCTGGC 49800 >seq65576 Length=5110 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/169 (72%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 |||||||||||||| ||||| | || ||||| | ||| || || | || ||||| Sbjct 1775 AGCTGAATTTTCAGTGGCTCAGTGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGT 1834 Query 146968 ACAAAGTCC---CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAG 147024 | ||||| || ||||| || | || | | | || | ||||||||||||||| ||| Sbjct 1835 ATAAAGTTATTACCTGGCTTCAGATCCGTGATGAGTGCAATCATGTAGGTGAGCAGGGAG 1894 Query 147025 TAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCT 147073 |||||||| |||||||| || || | ||||| || || | ||| ||| Sbjct 1895 TAGCTGGCAATGTTGAATGGCACACATAGGCCTATATCTGCTGACGTCT 1943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582317377200000