Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq83376 170 3e-36 seq80301 170 3e-36 seq79723 170 3e-36 seq10813 170 3e-36 seq135659 167 3e-35 seq77571 167 3e-35 seq76101 122 1e-21 seq72956 111 2e-18 seq122114 93.3 6e-13 seq80303 86.0 9e-11 >seq83376 Length=7469 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 526 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 579 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 580 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAACGCATCGCGGGCGAGGCGTCGCGC 639 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 640 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 699 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 700 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 748 >seq80301 Length=5813 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 2129 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 2182 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 2183 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAACGCATCGCGGGCGAGGCGTCGCGC 2242 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 2243 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2302 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 2303 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2351 >seq79723 Length=27194 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 14861 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 14914 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 14915 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAACGCATCGCGGGCGAGGCGTCGCGC 14974 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 14975 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 15034 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 15035 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 15083 >seq10813 Length=5319 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 254 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 307 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 308 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAACGCATCGCGGGCGAGGCGTCCCGC 367 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 368 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 427 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 428 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 476 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 4800 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 4747 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| ||||| ||| Sbjct 4746 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAACGCATCGCGGGGGAGGCGTCGCGC 4687 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 4686 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 4627 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 4626 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 4578 >seq135659 Length=1531 Score = 167 bits (184), Expect = 3e-35 Identities = 178/231 (77%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 1277 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 1330 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCG-GTC 725031 |||||||||||||| ||||||||||| |||| ||||||| | |||||| | | Sbjct 1331 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAACGCATCGCGGGGCGAGGCGTCGCC 1390 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| || ||| | || ||||||||||| ||||||| Sbjct 1391 GCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGC 1450 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1451 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1501 >seq77571 Length=13609 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || ||||| | |||| ||||| Sbjct 475 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATCC-CGTCCAAGGCCATG 528 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| ||||| ||| Sbjct 529 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAACGCATCGCGGGGGAGGCGTCGCGC 588 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 589 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 648 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 649 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 697 >seq76101 Length=7649 Score = 122 bits (134), Expect = 1e-21 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| || || || ||| || ||||| || | ||| Sbjct 1282 TACAAAGTGCTGAAGCAGGTTCATCCGGATAC---TGGCATCTCGTCCAA--AG-CTATG 1335 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||| ||||| |||| || || | ||||| || Sbjct 1336 GGCATCATGAACTCGTTTGTCAATGACATTTTCGAACGTATTGCTGGTGAGGCGTCCCGT 1395 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||||||| || ||| | | |||||||||||||| ||||||||| Sbjct 1396 CTGGCGCATTATAACAAGCGCTCTACTATCACCTCTCGCGAGATCCAGACAGCCGTGCGC 1455 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||||| |||||| |||||| || ||||||||||||| Sbjct 1456 TTGCTGCTGCCGGGCGAGTTGGCCAAGCACGCTGTGTCCGAGGGCACCA 1504 >seq72956 Length=13412 Score = 111 bits (122), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||| ||| || | | |||| || ||| | ||| Sbjct 4621 TACAAGGTGCTGAAGCAGGTGA--CCCAGACACA----GGCATC-TCATCGAAGGCAATG 4569 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||| | ||||||||||| | || | |||| || |||||| ||| Sbjct 4568 GGCATCATGAACTCGCTGGTCAACGACATCTTTGAGCACATCCCCAGCGAGGCTTCCCGC 4509 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | |||||| | |||| ||||||||| Sbjct 4508 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGCGAGGTGCAGATGGCCGTGCGC 4449 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG-AGGGCACCA 725142 ||| | ||| ||| || |||||| |||||| | || | ||||||||| Sbjct 4448 CTGCTGCTGCTCGGGGAGTTGGCCAAGCACGCTGGGTCGGAAGGGCACCA 4399 Score = 95.1 bits (104), Expect = 2e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||| ||| |||||||||||||| | | | |||| || ||| ||||| Sbjct 1220 TACAAGGAGCTGAAGCAGGTGCACCCGACA------GAGGCATC-TCATCGAAGGCCATG 1272 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| | || | || ||| ||| || |||||| ||| Sbjct 1273 GGCATCATGAACTCATTATTCAACAATATCGTTGAGCGCGTCGCCAGCGAGGCTCCCCGC 1332 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| || |||||| | ||| |||||| || Sbjct 1333 CTGGCGCATTACAACAAGCGCTGGACCATC-ACATCCGCGAGGTGCAGGTGGCCGTGGGC 1391 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 ||| | ||| || |||||||||| |||| || Sbjct 1392 CTGCTGCTGCCGGGGGAACTGGCCAAGCACCCC 1424 >seq122114 Length=16334 Score = 93.3 bits (102), Expect = 6e-13 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||||||||| ||||||||||||| || ||| |||| || |||| || Sbjct 16155 ATTTACAAGGTGCTGAAGCAGGTGCACCGGGAGAC---TGG--CATC-TCATCCAAGGCC 16208 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||||||||| || ||| ||||| | || ||||||| |||||| Sbjct 16209 ATGATCACCATGAACTCCTTCGTCGCTGACATCTTTGAGCGCATCGCGGGCGAGGCGTCG 16268 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| | |||||||||| || ||| | || ||||||||||| |||||| Sbjct 16269 CGCCTGGCGCAGTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 16328 Query 725091 CGCCTG 725096 |||||| Sbjct 16329 CGCCTG 16334 >seq80303 Length=5398 Score = 86.0 bits (94), Expect = 9e-11 Identities = 121/168 (72%), Gaps = 9/168 (5%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 2144 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 2197 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| || |||| |||||| ||| Sbjct 2198 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGGATCGCGGGCGAGGCGTCGCGC 2257 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAG 725081 ||||||| | |||||||| || |||| | | ||||||||| Sbjct 2258 CTGGCGCATT---ACAAGCGCTGGACCATCGCGTCCCAAGAGATCCAG 2302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7162330680001000