Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 132 4e-26
seq48881 111 1e-19
seq5492 98.7 9e-16
seq33159 86.0 6e-12
>seq63810
Length=35167
Score = 132 bits (146), Expect = 4e-26
Identities = 145/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || || || | || |||||||| || || |||||
Sbjct 27950 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAA 28009
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||||||||||||||| | || | || ||| ||||| |||||| ||| | | |
Sbjct 28010 GATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATT 28069
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | |||||||||| ||||| || ||||| ||||| || |||||
Sbjct 28070 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCAC 28129
Query 35725 AAATATCTGCATT 35737
||| |||||||||
Sbjct 28130 AAAGATCTGCATT 28142
Score = 125 bits (138), Expect = 6e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || || || | || |||||||| || || |||||
Sbjct 27494 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAA 27553
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||||||||||||||| | || | || ||| ||||| |||||| ||| | | |
Sbjct 27554 GATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATT 27613
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | |||||||||| ||||| || ||||| ||||| || |||||
Sbjct 27614 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCAC 27673
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 27674 GAAGATCTGCAT 27685
Score = 122 bits (134), Expect = 8e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| |||| || || || | || |||||||| || || |||||
Sbjct 27722 CTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAA 27781
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||||||||||||||| | || | || ||| ||||| |||||| ||| | | |
Sbjct 27782 GATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATT 27841
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | |||||||||| ||||| || ||||| ||||| || |||||
Sbjct 27842 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCAC 27901
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 27902 GAAGATCTGCAT 27913
>seq48881
Length=14873
Score = 111 bits (122), Expect = 1e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| || | | || || | || ||||||||||| || |||||
Sbjct 7422 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 7481
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || ||||||||| | || | || |||||| ||| |||||| ||||| | |
Sbjct 7482 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 7541
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||||| | |||||||||| ||||| || || ||||||| || |||||
Sbjct 7542 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 7601
Query 35725 AAATATCTGCATTCTG 35740
|| || |||||| ||
Sbjct 7602 GAAAATTTGCATTTTG 7617
>seq5492
Length=9153
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | |||||||| | ||| | || |||||||||||||||||| || | |
Sbjct 3828 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 3769
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || | | | || ||| | ||||| || ||||| |||| | ||||| || | ||||
Sbjct 3768 AAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3709
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| |||||| ||| | | || | || || | ||| |||
Sbjct 3708 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACC 3649
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | |||||||| || ||||||||
Sbjct 3648 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602
>seq33159
Length=15523
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | |||||||| | ||| | || |||||||||||||||||| || | |
Sbjct 2092 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2151
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || | | || ||||| ||||| || ||||| |||| | | | | || | ||||
Sbjct 2152 ACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGA 2211
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| ||||| ||| ||||| ||| | | || | | || || | ||| |||
Sbjct 2212 ATTTCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACC 2271
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | ||||||||||| ||||||||
Sbjct 2272 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 2318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449889195340000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |