Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 131 2e-25
seq12448 113 5e-20
seq5492 98.7 1e-15
seq48881 96.9 3e-15
seq33159 95.1 1e-14
seq18747 86.0 6e-12
>seq63810
Length=35167
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||||||| || | || ||||| || ||||| ||||| || ||||||||||||
Sbjct 27459 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27518
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || ||||||||||| ||||| ||||| |||||||| || || ||
Sbjct 27519 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27578
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| ||||| ||||| || || ||||| || | ||||| | |||||
Sbjct 27579 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27638
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| |||||||| || || || ||||| || |||||
Sbjct 27639 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||||||| || | || ||||| || ||||| ||||| || ||||||||||||
Sbjct 27915 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27974
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || ||||||||||| ||||| ||||| |||||||| || || ||
Sbjct 27975 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 28034
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| ||||| ||||| || || ||||| || | ||||| | |||||
Sbjct 28035 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 28094
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| || || ||||| |||||||| || || || || || || ||||||
Sbjct 28095 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||||||| || | || ||||| || ||||| || || || ||||||||||||
Sbjct 27687 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 27746
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || ||||||||||| ||||| ||||| |||||||| || || ||
Sbjct 27747 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27806
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| ||||| ||||| || || ||||| || | ||||| | |||||
Sbjct 27807 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27866
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| |||||||| || || || ||||| || |||||
Sbjct 27867 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| || | |||| || || || || ||||| ||||| || ||||||||||||
Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || ||||||||||| ||||| ||||| | |||||| || || ||
Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|||| ||||| ||||| || || ||||| || | ||||| | |||||
Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27410
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || |||| | |||||| | || || ||||| || |||||
Sbjct 27411 TCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457
>seq12448
Length=17785
Score = 113 bits (124), Expect = 5e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|||| |||||| || || || ||||| |||| ||||||||| ||||| || |||
Sbjct 3325 AGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCAT 3384
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || || || ||||||||||| |||| | ||||||| || || || ||||||
Sbjct 3385 CCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCT 3444
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||| || || | ||| || || | ||| || ||||| ||
Sbjct 3445 TTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTG 3504
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || | ||||| |||||||| ||||| |||
Sbjct 3505 ATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTTG 3546
>seq5492
Length=9153
Score = 98.7 bits (108), Expect = 1e-15
Identities = 157/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| |||||| || || || ||||| |||||||||||||||||||| | ||| |||
Sbjct 3819 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTGCA 3761
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
|| || | || ||||| ||||| |||| | |||||||| || || || |||||
Sbjct 3760 CCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 3701
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || || || || || || || ||| || | | ||| || ||||| ||
Sbjct 3700 CTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGT 3641
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || | ||||| |||||||| ||||| |||
Sbjct 3640 GATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTTG 3598
>seq48881
Length=14873
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || || || |||| || ||||| || || || || || || ||||||||||| |
Sbjct 7387 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 7446
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || ||||| ||||||||||| || | | |||||| || || ||
Sbjct 7447 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 7506
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || || || || | |||||| | |||||
Sbjct 7507 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 7566
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| || || ||||| || || || | || || ||||||||||||||||||
Sbjct 7567 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTTG 7617
>seq33159
Length=15523
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|||| |||||| || || || ||||| |||||||||||||||||||| || |||
Sbjct 2101 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCAT 2160
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || || || ||||| ||||| |||| | | | |||| || || || ||||
Sbjct 2161 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCC 2220
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || || || || | ||| || || | ||| || ||||| ||
Sbjct 2221 TTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTG 2280
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || | ||||| || ||||| ||||| |||
Sbjct 2281 ATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCATCTTG 2322
>seq18747
Length=37247
Score = 86.0 bits (94), Expect = 6e-12
Identities = 111/150 (74%), Gaps = 4/150 (3%)
Strand=Plus/Plus
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||||||||| |||||||||| ||||||||| |||||||| ||||| || || |||||
Sbjct 35528 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 35587
Query 134625 ATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683
||||| |||||| || || | ||||| | | || ||||| || ||||| ||
Sbjct 35588 ATTTTAGCTTTGACTTCG--CAGTAGTGTCACGGGGCTTGACCTCGAGTGTGATGGTCTT 35645
Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || | || || || || || |||||
Sbjct 35646 GCCCGTCAGGGTCTTCAC-AAGATCTGCAT 35674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 504384444460000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |