Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq85480 138 2e-27
seq95845 132 7e-26
seq88024 100 4e-16
seq15580 100 4e-16
seq124007 89.7 7e-13
>seq85480
Length=19824
Score = 138 bits (152), Expect = 2e-27
Identities = 106/126 (84%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | |||||| ||||| ||||| |||||||| || || || || |
Sbjct 17793 CCTCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17734
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct 17733 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 17674
Query 39759 CAACAA 39764
| ||||
Sbjct 17673 CTACAA 17668
>seq95845
Length=12527
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| |||||||| || || |||||||||||||| | ||
Sbjct 947 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 888
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||||
Sbjct 887 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 828
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 827 TTTCTTATACCAT 815
>seq88024
Length=2735
Score = 100 bits (110), Expect = 4e-16
Identities = 178/257 (69%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 37347 TCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCA 37404
||| || || ||||| ||| ||| | ||| | |||| ||||| | ||| |||||
Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTA--ATCTAAAACTTGAACTTCC 1865
Query 37405 TTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTT 37464
| | ||||| ||| | || |||| | | || ||||| || |||| ||| ||| | ||
Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925
Query 37465 ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCT 37524
| || ||| || ||| ||| ||| | ||| | || || ||||| || || ||||||
Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985
Query 37525 TCATCGATTACTCCGCCTCCTACATCAATACC---TTTTAGAGACAAACCCGATCTAGGA 37581
|| || || || || |||||||||| || |||| || ||| || || | |||
Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045
Query 37582 GCTATTCTTCCATAACA 37598
|||| ||||||||||||
Sbjct 2046 GCTACTCTTCCATAACA 2062
>seq15580
Length=3375
Score = 100 bits (110), Expect = 4e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| ||||| |||||||| ||||| | || ||
Sbjct 3264 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCTTT 3323
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750
| ||| ||||| |||||||||||||| || ||||| || |||||||| ||
Sbjct 3324 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGC 3373
>seq124007
Length=20016
Score = 89.7 bits (98), Expect = 7e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | || ||||| ||||| || ||||| | |||||||| || |||
Sbjct 7188 GTACCAGCATTGAAGAGAGTGGGAGAGGCGTGGGTAAACCACCTCTCAGAAAGAAGGTTG 7129
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|||||||||||||| | || ||||| | |||||| || | | || | |||||||
Sbjct 7128 TATGTTTCAATAGCAGCATCAATATCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 7069
Query 70111 ATATGCTGAGGTCGTTC 70127
||||| || |||| |||
Sbjct 7068 ATATGTTGTGGTCTTTC 7052
Score = 86.0 bits (94), Expect = 9e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566
||||||| || ||||| ||||||||||| ||||||| |||||||| |||||||||||
Sbjct 14618 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 14559
Query 69567 CATCAATGACCA 69578
|||||| |||||
Sbjct 14558 CATCAAAGACCA 14547
Score = 84.2 bits (92), Expect = 3e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| ||||||||||| || | || || || |||| | |
Sbjct 14156 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 14097
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| |||||||| | || || ||||||| ||
Sbjct 14096 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 14037
Query 69715 TCTAGATATATCGCCATGACTCCCGGTCG 69743
|| | || || || | |||| |||||
Sbjct 14036 TCCAAGTAAATAGCAAATGCTCCAGGTCG 14008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685530689220000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |