Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq85480 138 2e-27 seq95845 132 7e-26 seq88024 100 4e-16 seq15580 100 4e-16 seq124007 89.7 7e-13 >seq85480 Length=19824 Score = 138 bits (152), Expect = 2e-27 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | |||||| ||||| ||||| |||||||| || || || || | Sbjct 17793 CCTCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17734 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||| | Sbjct 17733 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 17674 Query 39759 CAACAA 39764 | |||| Sbjct 17673 CTACAA 17668 >seq95845 Length=12527 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || |||||||||||||| | || Sbjct 947 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 888 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||||| Sbjct 887 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 828 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 827 TTTCTTATACCAT 815 >seq88024 Length=2735 Score = 100 bits (110), Expect = 4e-16 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCA 37404 ||| || || ||||| ||| ||| | ||| | |||| ||||| | ||| ||||| Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTA--ATCTAAAACTTGAACTTCC 1865 Query 37405 TTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTT 37464 | | ||||| ||| | || |||| | | || ||||| || |||| ||| ||| | || Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925 Query 37465 ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCT 37524 | || ||| || ||| ||| ||| | ||| | || || ||||| || || |||||| Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985 Query 37525 TCATCGATTACTCCGCCTCCTACATCAATACC---TTTTAGAGACAAACCCGATCTAGGA 37581 || || || || || |||||||||| || |||| || ||| || || | ||| Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045 Query 37582 GCTATTCTTCCATAACA 37598 |||| |||||||||||| Sbjct 2046 GCTACTCTTCCATAACA 2062 >seq15580 Length=3375 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| ||||| |||||||| ||||| | || || Sbjct 3264 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCTTT 3323 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 | ||| ||||| |||||||||||||| || ||||| || |||||||| || Sbjct 3324 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGC 3373 >seq124007 Length=20016 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| ||||| || ||||| | |||||||| || ||| Sbjct 7188 GTACCAGCATTGAAGAGAGTGGGAGAGGCGTGGGTAAACCACCTCTCAGAAAGAAGGTTG 7129 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | |||||| || | | || | ||||||| Sbjct 7128 TATGTTTCAATAGCAGCATCAATATCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 7069 Query 70111 ATATGCTGAGGTCGTTC 70127 ||||| || |||| ||| Sbjct 7068 ATATGTTGTGGTCTTTC 7052 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| ||||||||||| ||||||| |||||||| ||||||||||| Sbjct 14618 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 14559 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 14558 CATCAAAGACCA 14547 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | Sbjct 14156 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 14097 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | || || ||||||| || Sbjct 14096 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 14037 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCG 69743 || | || || || | |||| ||||| Sbjct 14036 TCCAAGTAAATAGCAAATGCTCCAGGTCG 14008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685530689220000