Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq85480 111 1e-19 seq123290 100 2e-16 seq15580 100 2e-16 seq82175 89.7 4e-13 seq19055 82.4 6e-11 >seq85480 Length=19824 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| ||||||| || ||||| ||||| || |||||||| Sbjct 15785 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 15843 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||| ||||| || || || || |||||||||||| Sbjct 15844 CATGGAAAACATACATTCTGAGATGTATAGTCTCCTCATTGACACTTACATCAAAGAT 15901 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | || ||||| || |||||||| || || ||||| Sbjct 17658 GGAGAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 17717 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | |||||||| || || | Sbjct 17718 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAACGAACTT 17777 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 17778 ATTAGCAGAGATGA 17791 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| ||||||||||||| || ||||| |||||||| ||||||| || || ||||| ||| Sbjct 19101 GTAGAAAACCCGTTTGACTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 19160 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAA 44605 ||||| | || || || || ||| ||||||| || ||| || ||| || ||| Sbjct 19161 GAAAAGAGAGTAGGCGAGTACCAGAGAATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 19220 Query 44606 TTTACTACGGATGAAGATTTCTAA 44629 ||||| ||||| || |||||| Sbjct 19221 TTTACCTTGGATGCTGACTTCTAA 19244 >seq123290 Length=7163 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | |||||||| | | ||| | ||| | || ||| | ||||||| || || ||| Sbjct 1768 GTGCTACAATTTTTTTAATTATATAAGAAAACTGGCAAATTGGTATTTCTTGGATTGGAC 1709 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAAC 47335 ||||| |||||||| |||| || ||||| | | | || ||| |||| | | Sbjct 1708 AATGCTGGAAAAACAACATTGCT--ACATGATGACAGAC--TTG---GAAA-----TGTC 1661 Query 47336 CCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTT 47395 || | |||||||| | ||| ||| ||||||| ||||||||||| || |||| || || Sbjct 1660 CCAATGTTACATCCCATCTCAGAAGAACTAACCATTGCTGGCATGACCTTTACAACTTTC 1601 Query 47396 GATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAA 47434 ||| | || |||| ||||||| || ||| ||||| || Sbjct 1600 GATCTGGGTGGACCTGTTCAAGCTCGAAGAGTGTGGAAA 1562 >seq15580 Length=3375 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 ||| ||||| |||||||| || ||||| ||||| || ||||| |||||||||||| |||| Sbjct 3371 TGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGGTTAAAGAAAAGAGG 3312 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258 | | ||||||||| | || ||||| ||||| | || || | ||||||| Sbjct 3311 TCTTATGCCTGGGCTCACTTTTTCCAATGAACTCATCAGCAGAGATGAAG 3262 >seq82175 Length=13617 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 839 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 898 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 899 AACGAGTTTCAGAGTATCAGCG 920 >seq19055 Length=39295 Score = 82.4 bits (90), Expect = 6e-11 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | ||||| ||||| ||||| ||||| Sbjct 30504 AACAGTGGTTTGCACATCATCATCTTTGATGAAATCGACGCCATCTGCAAGCAGAGAGGA 30445 Query 19600 TC--TGGT--GTA--AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||| ||| | ||||| || |||||||||||||| || | ||||| ||| | Sbjct 30444 AGCATGGCCGGTAGCACGGGAGTTCACGACACTGTTGTCAACCAGTTGCTGTCCAAAATC 30385 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 ||||| || | || || || || || ||||| ||||| ||| Sbjct 30384 GACGGGGTAGAGCAGCTCAACAACATCTTAGTCATTGGTATG 30343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396678538802500