Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq85480 111 1e-19
seq123290 100 2e-16
seq15580 100 2e-16
seq82175 89.7 4e-13
seq19055 82.4 6e-11
>seq85480
Length=19824
Score = 111 bits (122), Expect = 1e-19
Identities = 97/118 (82%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||
Sbjct 15785 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 15843
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| || ||||| ||||| || || || || ||||||||||||
Sbjct 15844 CATGGAAAACATACATTCTGAGATGTATAGTCTCCTCATTGACACTTACATCAAAGAT 15901
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| |||| || ||||| | || ||||| || |||||||| || || |||||
Sbjct 17658 GGAGAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 17717
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| |||||||||| | |||||||| || || |
Sbjct 17718 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAACGAACTT 17777
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 17778 ATTAGCAGAGATGA 17791
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/144 (74%), Gaps = 3/144 (2%)
Strand=Plus/Plus
Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548
||| ||||||||||||| || ||||| |||||||| ||||||| || || ||||| |||
Sbjct 19101 GTAGAAAACCCGTTTGACTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 19160
Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAA 44605
||||| | || || || || ||| ||||||| || ||| || ||| || |||
Sbjct 19161 GAAAAGAGAGTAGGCGAGTACCAGAGAATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 19220
Query 44606 TTTACTACGGATGAAGATTTCTAA 44629
||||| ||||| || ||||||
Sbjct 19221 TTTACCTTGGATGCTGACTTCTAA 19244
>seq123290
Length=7163
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 12/219 (5%)
Strand=Plus/Minus
Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275
||| | |||||||| | | ||| | ||| | || ||| | ||||||| || || |||
Sbjct 1768 GTGCTACAATTTTTTTAATTATATAAGAAAACTGGCAAATTGGTATTTCTTGGATTGGAC 1709
Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAAC 47335
||||| |||||||| |||| || ||||| | | | || ||| |||| | |
Sbjct 1708 AATGCTGGAAAAACAACATTGCT--ACATGATGACAGAC--TTG---GAAA-----TGTC 1661
Query 47336 CCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTT 47395
|| | |||||||| | ||| ||| ||||||| ||||||||||| || |||| || ||
Sbjct 1660 CCAATGTTACATCCCATCTCAGAAGAACTAACCATTGCTGGCATGACCTTTACAACTTTC 1601
Query 47396 GATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAA 47434
||| | || |||| ||||||| || ||| ||||| ||
Sbjct 1600 GATCTGGGTGGACCTGTTCAAGCTCGAAGAGTGTGGAAA 1562
>seq15580
Length=3375
Score = 100 bits (110), Expect = 2e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208
||| ||||| |||||||| || ||||| ||||| || ||||| |||||||||||| ||||
Sbjct 3371 TGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGGTTAAAGAAAAGAGG 3312
Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258
| | ||||||||| | || ||||| ||||| | || || | |||||||
Sbjct 3311 TCTTATGCCTGGGCTCACTTTTTCCAATGAACTCATCAGCAGAGATGAAG 3262
>seq82175
Length=13617
Score = 89.7 bits (98), Expect = 4e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 839 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 898
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 899 AACGAGTTTCAGAGTATCAGCG 920
>seq19055
Length=39295
Score = 82.4 bits (90), Expect = 6e-11
Identities = 117/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||||||||| || || | |||||| | ||||| ||||| ||||| |||||
Sbjct 30504 AACAGTGGTTTGCACATCATCATCTTTGATGAAATCGACGCCATCTGCAAGCAGAGAGGA 30445
Query 19600 TC--TGGT--GTA--AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||| ||| | ||||| || |||||||||||||| || | ||||| ||| |
Sbjct 30444 AGCATGGCCGGTAGCACGGGAGTTCACGACACTGTTGTCAACCAGTTGCTGTCCAAAATC 30385
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
||||| || | || || || || || ||||| ||||| |||
Sbjct 30384 GACGGGGTAGAGCAGCTCAACAACATCTTAGTCATTGGTATG 30343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396678538802500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |