Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_028099.1
Length=122522
Score E
Sequences producing significant alignments: (Bits) Value
seq75256 87.8 1e-12
seq65576 84.2 2e-11
>seq75256
Length=16458
Score = 87.8 bits (96), Expect = 1e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837
||||||||||| || |||||||| ||||| || ||| || || ||||| || |||||
Sbjct 6377 CCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGCACC 6436
Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897
|| |||||||| ||| | || || ||||| ||||| || || || | | |||
Sbjct 6437 CCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACCACG 6496
Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935
|| || || ||||| |||| || ||||| | |||||
Sbjct 6497 TAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCAT 6534
>seq65576
Length=5110
Score = 84.2 bits (92), Expect = 2e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 111769 GGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTA 111828
|||| || | | |||||| ||||||||||||| ||||| || ||| || ||||||||
Sbjct 1850 GGCTTCAGATCCGTGATGAGTGCAATCATGTAGGTGAGCAGGGAGTAGCTGGCAATGTTG 1909
Query 111829 AATGGCACACCTAGGCCCATATCT 111852
|||||||||| |||||| ||||||
Sbjct 1910 AATGGCACACATAGGCCTATATCT 1933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 391178917661500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |