Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq75256 87.8 1e-12 seq65576 84.2 2e-11 >seq75256 Length=16458 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 ||||||||||| || |||||||| ||||| || ||| || || ||||| || ||||| Sbjct 6377 CCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGCACC 6436 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||| ||| | || || ||||| ||||| || || || | | ||| Sbjct 6437 CCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACCACG 6496 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 || || || ||||| |||| || ||||| | ||||| Sbjct 6497 TAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCAT 6534 >seq65576 Length=5110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 111769 GGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTA 111828 |||| || | | |||||| ||||||||||||| ||||| || ||| || |||||||| Sbjct 1850 GGCTTCAGATCCGTGATGAGTGCAATCATGTAGGTGAGCAGGGAGTAGCTGGCAATGTTG 1909 Query 111829 AATGGCACACCTAGGCCCATATCT 111852 |||||||||| |||||| |||||| Sbjct 1910 AATGGCACACATAGGCCTATATCT 1933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391178917661500