Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq104951 98.7 6e-16
>seq104951
Length=12537
Score = 98.7 bits (108), Expect = 6e-16
Identities = 156/220 (71%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || |||||| ||| || | |||||||| ||||| || || ||
Sbjct 11025 AGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGG 11084
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || ||||| || |||| || | |||||| ||||| || || | ||||||
Sbjct 11085 CCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 11144
Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA-CTTCCACGG 34666
|||||| ||| ||| | ||| ||| | ||| ||||| | ||| | ||| | |
Sbjct 11145 TTGTCTTGGAT-TTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTG 11203
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || | |||||| |||| ||||||||
Sbjct 11204 TGATGGTCTTGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314113959396500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |