Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq104951 98.7 6e-16 >seq104951 Length=12537 Score = 98.7 bits (108), Expect = 6e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || |||||| ||| || | |||||||| ||||| || || || Sbjct 11025 AGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGG 11084 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| || |||| || | |||||| ||||| || || | |||||| Sbjct 11085 CCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 11144 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA-CTTCCACGG 34666 |||||| ||| ||| | ||| ||| | ||| ||||| | ||| | ||| | | Sbjct 11145 TTGTCTTGGAT-TTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTG 11203 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | |||||| |||| |||||||| Sbjct 11204 TGATGGTCTTGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314113959396500