Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq75256 156 4e-33 seq65576 100 3e-16 >seq75256 Length=16458 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | ||| || || |||||||| |||||||| | ||| Sbjct 6386 TGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGCACCCCCAGGCCC 6445 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||| | || | ||||| ||||||||||||||||| || ||| | |||||||| ||| Sbjct 6446 ATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACCACGTAGAACTGG 6505 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||||| || || ||||| ||||| ||||| Sbjct 6506 CAAAGGGCATGGCACGGAGGTAGGGCCATGAGAGGCAGATC 6546 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| || || |||||||| |||| ||||| |||||||| | ||| Sbjct 6546 GATCTGCCTCTCATGGCCCTACCTCCGTGCCATGCCCTTTGCCAGTTCTACGTGGTGAAC 6487 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| ||||| | || | ||||||||| | |||||||| ||| Sbjct 6486 GGCGAGCTGTCCTGCCAGCTGTATCAGAGGTCAGCAGACATGGGCCTGGGGGTGCCTTTC 6427 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||| | |||||||| ||||||||||| || Sbjct 6426 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCGCA 6386 >seq65576 Length=5110 Score = 100 bits (110), Expect = 3e-16 Identities = 172/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 || |||||||| |||||||| | ||| || ||||||||||| ||||| | || || || Sbjct 1871 GCAATCATGTAGGTGAGCAGGGAGTAGCTGGCAATGTTGAATGGCACACATAGGCCTATA 1930 Query 6683 TCTCCCGATCGTTGATAGAGCTGGC---AGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||| | || ||| | | | | || | ||||||| ||| | || |||| ||| Sbjct 1931 TCTGCTGA-CGTCTAGAAGGGTTGCTTTACAACAGCTCATTGTTCTCCACATAGAGCTGG 1989 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCAC 6799 || |||| ||||| | || || |||| ||||| ||||| || || ||||| | |||| Sbjct 1990 CAAAGGGCATGGCATGAAGGAAGGTCCATGAGAGGAAGATCGTTTGGATTCCAAGTGCAC 2049 Query 6800 ATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGG 6859 | | ||| ||||| | |||||||| ||| | |||| | || | ||||| ||| Sbjct 2050 AGGATGATTCTTCTAACGTCAGGGTTGTTCTTGATAATGTCAGTAACCTTTTGCAGTTGG 2109 Query 6860 TCCGCTCC 6867 || |||| Sbjct 2110 TCTACTCC 2117 Score = 100 bits (110), Expect = 3e-16 Identities = 172/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 34478 GGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGG 34537 |||| ||||| ||||| | || | |||| | ||| |||||||| | ||||| Sbjct 2117 GGAGTAGACCAACTGCAAAAGGTTACTGACATTATCAAGAACAACCCTGACGTTAGAAGA 2058 Query 34538 ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCAC 34597 ||| | ||||| | ||||| || || ||||| ||||| |||| || || | ||||| Sbjct 2057 ATCATCCTGTGCACTTGGAATCCAAACGATCTTCCTCTCATGGACCTTCCTTCATGCCAT 1998 Query 34598 ACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT---GCCAGCTCTATCAACGA 34654 |||| ||||| |||| || | ||| ||||||| | || | | | | ||| Sbjct 1997 GCCCTTTGCCAGCTCTATGTGGAGAACAATGAGCTGTTGTAAAGCAACCCTTCTAGACG- 1939 Query 34655 TCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTAC 34714 || | ||| || || || | ||||| ||||||||||| || ||| | |||||||| ||| Sbjct 1938 TCAGCAGATATAGGCCTATGTGTGCCATTCAACATTGCCAGCTACTCCCTGCTCACCTAC 1879 Query 34715 ATGATCGC 34722 ||||| || Sbjct 1878 ATGATTGC 1871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447363073560000