Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq75256 156 4e-33
seq65576 100 3e-16
>seq75256
Length=16458
Score = 156 bits (172), Expect = 4e-33
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| | ||| || || |||||||| |||||||| | |||
Sbjct 6386 TGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGCACCCCCAGGCCC 6445
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|||||| | || | ||||| ||||||||||||||||| || ||| | |||||||| |||
Sbjct 6446 ATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACCACGTAGAACTGG 6505
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
|| |||| |||||||| || || ||||| ||||| |||||
Sbjct 6506 CAAAGGGCATGGCACGGAGGTAGGGCCATGAGAGGCAGATC 6546
Score = 156 bits (172), Expect = 4e-33
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||| ||||| || || |||||||| |||| ||||| |||||||| | |||
Sbjct 6546 GATCTGCCTCTCATGGCCCTACCTCCGTGCCATGCCCTTTGCCAGTTCTACGTGGTGAAC 6487
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||||| ||||| | || | ||||||||| | |||||||| |||
Sbjct 6486 GGCGAGCTGTCCTGCCAGCTGTATCAGAGGTCAGCAGACATGGGCCTGGGGGTGCCTTTC 6427
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||| | |||||||| ||||||||||| ||
Sbjct 6426 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCGCA 6386
>seq65576
Length=5110
Score = 100 bits (110), Expect = 3e-16
Identities = 172/248 (69%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682
|| |||||||| |||||||| | ||| || ||||||||||| ||||| | || || ||
Sbjct 1871 GCAATCATGTAGGTGAGCAGGGAGTAGCTGGCAATGTTGAATGGCACACATAGGCCTATA 1930
Query 6683 TCTCCCGATCGTTGATAGAGCTGGC---AGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||| | || ||| | | | | || | ||||||| ||| | || |||| |||
Sbjct 1931 TCTGCTGA-CGTCTAGAAGGGTTGCTTTACAACAGCTCATTGTTCTCCACATAGAGCTGG 1989
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCAC 6799
|| |||| ||||| | || || |||| ||||| ||||| || || ||||| | ||||
Sbjct 1990 CAAAGGGCATGGCATGAAGGAAGGTCCATGAGAGGAAGATCGTTTGGATTCCAAGTGCAC 2049
Query 6800 ATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGG 6859
| | ||| ||||| | |||||||| ||| | |||| | || | ||||| |||
Sbjct 2050 AGGATGATTCTTCTAACGTCAGGGTTGTTCTTGATAATGTCAGTAACCTTTTGCAGTTGG 2109
Query 6860 TCCGCTCC 6867
|| ||||
Sbjct 2110 TCTACTCC 2117
Score = 100 bits (110), Expect = 3e-16
Identities = 172/248 (69%), Gaps = 4/248 (2%)
Strand=Plus/Minus
Query 34478 GGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGG 34537
|||| ||||| ||||| | || | |||| | ||| |||||||| | |||||
Sbjct 2117 GGAGTAGACCAACTGCAAAAGGTTACTGACATTATCAAGAACAACCCTGACGTTAGAAGA 2058
Query 34538 ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCAC 34597
||| | ||||| | ||||| || || ||||| ||||| |||| || || | |||||
Sbjct 2057 ATCATCCTGTGCACTTGGAATCCAAACGATCTTCCTCTCATGGACCTTCCTTCATGCCAT 1998
Query 34598 ACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT---GCCAGCTCTATCAACGA 34654
|||| ||||| |||| || | ||| ||||||| | || | | | | |||
Sbjct 1997 GCCCTTTGCCAGCTCTATGTGGAGAACAATGAGCTGTTGTAAAGCAACCCTTCTAGACG- 1939
Query 34655 TCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTAC 34714
|| | ||| || || || | ||||| ||||||||||| || ||| | |||||||| |||
Sbjct 1938 TCAGCAGATATAGGCCTATGTGTGCCATTCAACATTGCCAGCTACTCCCTGCTCACCTAC 1879
Query 34715 ATGATCGC 34722
||||| ||
Sbjct 1878 ATGATTGC 1871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447363073560000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |