Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq28486 163 2e-35
seq95526 113 4e-20
seq128334 98.7 8e-16
seq75256 95.1 1e-14
>seq28486
Length=29240
Score = 163 bits (180), Expect = 2e-35
Identities = 188/253 (74%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCC 1337
|| ||||| | |||| |||||||| ||| | || || | |||||||||||||||| |
Sbjct 19621 CAGGAAGTCTTGGTTGTGACATGGCAGAAAATCAAGGCTGCTAGCCCAGAAAACATGGTC 19562
Query 1338 ACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATA 1397
|| || || || ||| || ||||| || |||||||| || || || || || |||||
Sbjct 19561 ACCTTCAGCAAGTCCCATGGTGTTGTGGTCCAGCCAGCCTATAAGGACAAGATAAACATC 19502
Query 1398 ACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAA 1457
|||||||| ||||| || ||| |||| || ||||||||||| || || |||| |||||
Sbjct 19501 ACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTGGAGGATGAG 19442
Query 1458 GGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGT 1517
|| || ||| | || | || || || ||||| |||||||| | | ||||| || ||
Sbjct 19441 GGATGTTACCAATGCCTCTTCAATACCTTTGGTTCTGGGAATGTCTTAGGAAAAGCCTGC 19382
Query 1518 CTAACCCTTTTTG 1530
|| || || ||||
Sbjct 19381 CTCACTCTATTTG 19369
>seq95526
Length=8033
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||| ||| | || ||||| ||||||||| | ||||| || |||||||||
Sbjct 7816 GTGGTGGAGGAGCTTTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 7757
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 7756 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 7697
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 7696 ATCGCCCTGTGGATGACCGA 7677
>seq128334
Length=22885
Score = 98.7 bits (108), Expect = 8e-16
Identities = 327/501 (65%), Gaps = 21/501 (4%)
Strand=Plus/Plus
Query 2188 GGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACAT-- 2245
||| | || || ||||| ||||| |||||||| ||| ||||||||| |||||| |
Sbjct 12496 GGAGACCTACCCTGGCC-CCTCTCGGGAATGAATTAAAATATTTTCAAAGAATGACCTTA 12554
Query 2246 -CTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCA 2304
| ||| | || || || |||| |||| |||||||| ||||| || ||||| ||
Sbjct 12555 ACCCCTTGAGCAGAAGAAACACCGAAT-TTGTGATTATGGGTAGAAATACCTGGTTCTCC 12613
Query 2305 CTTCCCATTAA-AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCT 2363
|||| || || || ||||| || |||| || ||| | ||||||| |||| | ||
Sbjct 12614 GTTCCTGAGAAGAATCAA-CCTTTAAAGGACAGGATTAATTTAGTTCTCAATAGAGAACT 12672
Query 2364 TAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAAT 2423
|| || || | | || | ||| ||| |||| ||||| | ||| | ||| || || |
Sbjct 12673 CAAGGAACCTCTGCAAGGAGTTCATTTTCTTGCCCAAAGTCTGGATGATGCTTTGAAACT 12732
Query 2424 TATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATC 2483
|| ||||||||||| | || ||||| | | |||||| | | || || ||
Sbjct 12733 TACTGAGCAACCAGAATTAACAAACCAAGTGGACATGGCTTGGATGGTGGAAGGCAGTTC 12792
Query 2484 TGTCTATGAGGAGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTC 2542
|| ||| |||| ||| ||||| | || | | | || || | ||||||
Sbjct 12793 TGATTATAAGGAAGCCATGAACAAG-CCAGGCCACCTTAGACTATTCGTGACAAGG---- 12847
Query 2543 TGCAAAAATTTGAATGTGATACA--TACTTCCCAGAAATTAATCTTACCAAATACAAACA 2600
||||||| |||| ||| | || |||| || | | | ||||| ||||
Sbjct 12848 ------AATTTGACAGTGACACATGTTTTTTCCAGGAACTGCTTTGGAGAAATATAAACT 12901
Query 2601 ACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAA 2660
|| | |||| ||||| | |||| || || || || || || |||| ||||||
Sbjct 12902 TCTCCCAGAATACCCAGGAGGAAATTCTGATGTCCAGGAGGAGAAAGGCATTAAATACAA 12961
Query 2661 ATTTGAGATATATGaaaaaaa 2681
|||||| ||||| ||| ||
Sbjct 12962 ATTTGAAGTATATACAAACAA 12982
>seq75256
Length=16458
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| || |||||||| || | || ||||||||| | || |||||
Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| ||||| |||||||||||||| ||||| |||| ||||| || ||||| ||||| |
Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695
|| || ||||| | | | || || ||||| || |||||
Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATG 6535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413666044522000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |