Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq28486 163 2e-35 seq95526 113 4e-20 seq128334 98.7 8e-16 seq75256 95.1 1e-14 >seq28486 Length=29240 Score = 163 bits (180), Expect = 2e-35 Identities = 188/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCC 1337 || ||||| | |||| |||||||| ||| | || || | |||||||||||||||| | Sbjct 19621 CAGGAAGTCTTGGTTGTGACATGGCAGAAAATCAAGGCTGCTAGCCCAGAAAACATGGTC 19562 Query 1338 ACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATA 1397 || || || || ||| || ||||| || |||||||| || || || || || ||||| Sbjct 19561 ACCTTCAGCAAGTCCCATGGTGTTGTGGTCCAGCCAGCCTATAAGGACAAGATAAACATC 19502 Query 1398 ACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAA 1457 |||||||| ||||| || ||| |||| || ||||||||||| || || |||| ||||| Sbjct 19501 ACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTGGAGGATGAG 19442 Query 1458 GGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGT 1517 || || ||| | || | || || || ||||| |||||||| | | ||||| || || Sbjct 19441 GGATGTTACCAATGCCTCTTCAATACCTTTGGTTCTGGGAATGTCTTAGGAAAAGCCTGC 19382 Query 1518 CTAACCCTTTTTG 1530 || || || |||| Sbjct 19381 CTCACTCTATTTG 19369 >seq95526 Length=8033 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 7816 GTGGTGGAGGAGCTTTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 7757 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 7756 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 7697 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 7696 ATCGCCCTGTGGATGACCGA 7677 >seq128334 Length=22885 Score = 98.7 bits (108), Expect = 8e-16 Identities = 327/501 (65%), Gaps = 21/501 (4%) Strand=Plus/Plus Query 2188 GGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACAT-- 2245 ||| | || || ||||| ||||| |||||||| ||| ||||||||| |||||| | Sbjct 12496 GGAGACCTACCCTGGCC-CCTCTCGGGAATGAATTAAAATATTTTCAAAGAATGACCTTA 12554 Query 2246 -CTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCA 2304 | ||| | || || || |||| |||| |||||||| ||||| || ||||| || Sbjct 12555 ACCCCTTGAGCAGAAGAAACACCGAAT-TTGTGATTATGGGTAGAAATACCTGGTTCTCC 12613 Query 2305 CTTCCCATTAA-AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCT 2363 |||| || || || ||||| || |||| || ||| | ||||||| |||| | || Sbjct 12614 GTTCCTGAGAAGAATCAA-CCTTTAAAGGACAGGATTAATTTAGTTCTCAATAGAGAACT 12672 Query 2364 TAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAAT 2423 || || || | | || | ||| ||| |||| ||||| | ||| | ||| || || | Sbjct 12673 CAAGGAACCTCTGCAAGGAGTTCATTTTCTTGCCCAAAGTCTGGATGATGCTTTGAAACT 12732 Query 2424 TATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATC 2483 || ||||||||||| | || ||||| | | |||||| | | || || || Sbjct 12733 TACTGAGCAACCAGAATTAACAAACCAAGTGGACATGGCTTGGATGGTGGAAGGCAGTTC 12792 Query 2484 TGTCTATGAGGAGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTC 2542 || ||| |||| ||| ||||| | || | | | || || | |||||| Sbjct 12793 TGATTATAAGGAAGCCATGAACAAG-CCAGGCCACCTTAGACTATTCGTGACAAGG---- 12847 Query 2543 TGCAAAAATTTGAATGTGATACA--TACTTCCCAGAAATTAATCTTACCAAATACAAACA 2600 ||||||| |||| ||| | || |||| || | | | ||||| |||| Sbjct 12848 ------AATTTGACAGTGACACATGTTTTTTCCAGGAACTGCTTTGGAGAAATATAAACT 12901 Query 2601 ACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAA 2660 || | |||| ||||| | |||| || || || || || || |||| |||||| Sbjct 12902 TCTCCCAGAATACCCAGGAGGAAATTCTGATGTCCAGGAGGAGAAAGGCATTAAATACAA 12961 Query 2661 ATTTGAGATATATGaaaaaaa 2681 |||||| ||||| ||| || Sbjct 12962 ATTTGAAGTATATACAAACAA 12982 >seq75256 Length=16458 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || ||||| Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| |||||||||||||| ||||| |||| ||||| || ||||| ||||| | Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || ||||| | | | || || ||||| || ||||| Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATG 6535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413666044522000