Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 102 7e-17
seq32806 102 7e-17
seq104951 96.9 3e-15
seq18747 86.0 5e-12
seq4243 86.0 5e-12
seq2401 86.0 5e-12
seq93939 82.4 7e-11
>seq63810
Length=35167
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| ||||| | || | |||| || || ||| |||||| || || || || ||
Sbjct 27683 CATGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 27742
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
|| || || ||| | || || ||||||||||| ||||| || | ||||||||||| |
Sbjct 27743 GGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGG 27802
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | || ||||||||| ||| || |||| || | | || || || | |||
Sbjct 27803 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 27862
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| | || || |||| || || || ||||| |||||
Sbjct 27863 CACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| ||||| | || | |||| || || ||| ||| || || || || || ||
Sbjct 27911 CATGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 27970
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
|| || || ||| | || || ||||||||||| ||||| || | ||||||||||| |
Sbjct 27971 GGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGG 28030
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | || ||||||||| ||| || |||| || | | || || || | |||
Sbjct 28031 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 28090
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| | || || |||| || || |||||||| |||||
Sbjct 28091 CACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 28141
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| ||||| | || | |||| || || ||| ||| || || || || || ||
Sbjct 27455 CATGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 27514
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
|| || || ||| | || || ||||||||||| ||||| || | ||||||||||| |
Sbjct 27515 GGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGG 27574
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | || ||||||||| ||| || |||| || | | || || || | |||
Sbjct 27575 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 27634
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| | || || |||| || || || ||||| |||||
Sbjct 27635 CACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| || ||||| | |||| ||| || ||| ||| || || || || || ||||
Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || ||| | || || ||||||||||| ||||| || | | ||||||||| | |||
Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
|| ||||||||| ||| || |||| || | | || || || | ||||||
Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27410
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| ||||| | || ||| || || || ||||| |||||
Sbjct 27411 TCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457
>seq32806
Length=18495
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||||| || ||||| || || | || || || | || ||
Sbjct 13611 CACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTC 13552
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
|||||||||| ||||| | ||||||||||||| |||||| | || ||| || ||
Sbjct 13551 CAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTATCTT 13493
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
| |||| ||||| || | | ||||| || | |||||| || | ||||| | |
Sbjct 13492 GGGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCT 13433
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || ||||| || || |||||||| |||||||
Sbjct 13432 TGCCTGTCAGGGTCTTCACAAAGATGTGCATCT 13400
>seq104951
Length=12537
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/217 (71%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||||| | || ||||| || | || || || | || ||
Sbjct 11033 CACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 11092
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
|||||||||||| |||| || |||||||||||||| |||||| | || ||| |||||
Sbjct 11093 CAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTT 11151
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA-CGTCCACCGTGATACTT 39252
|||||| ||||| | | | || || || | ||| | | | | ||||| |
Sbjct 11152 GGATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTC 11211
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289
|| || ||||| ||||| ||||||| ||||||| ||
Sbjct 11212 TTGCCTGTCAGGGTTTTCCCAAAGATCTGCATCTCTA 11248
>seq18747
Length=37247
Score = 86.0 bits (94), Expect = 5e-12
Identities = 111/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||||||||||||||| || |||||||||||||||| || | || ||| ||||| |
Sbjct 35528 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 35587
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
||||| ||||| | |||| || || | | || || || | ||||| | ||
Sbjct 35588 ATTTTAGCTTTGA-CTTCGCAGTAGTGTCACGGGGCTTGACCTCGAGTGTGATGGTCTTG 35646
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|||||||| || || || ||||| |||||||
Sbjct 35647 CCCGTCAGGGTCTTCAC-AAGATCTGCATCT 35676
>seq4243
Length=11451
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || |||||| | ||||||||||| | || || | | || ||
Sbjct 6775 CACCAAGTGCAGTATGAACTCTTTCTAGATATTATAATCTGTGAGAGTGCAACCATCCTC 6716
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||||||||| |||| || |||| ||||||||| | || | || || ||||||
Sbjct 6715 CAGCTGTTTGCCCACAAAAATCAGACACTGCTGGTCAGACGGGATGCCCTACTTGTCCTG 6656
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|||||| |||| || | || || || || | |||||| | | ||||| | ||
Sbjct 6655 GATTTTAGCTTTGCCATTCTCAACAGTGTCACTGGGCTCCACCTTTAGTGTGATGGTCTT 6596
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTG 39281
||||| || || |||||||| ||
Sbjct 6595 AGTGGTCAGAGTCTTCACAAAGATCTG 6569
>seq2401
Length=18371
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| | |||| || |||||||| || | || || || | || ||
Sbjct 354 CACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 295
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||||||||| ||||| || |||||||||||||| |||||| | | ||| ||||
Sbjct 294 CAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGG-ATACCCTCCTTGTTTT 236
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| ||||| || | | || || | | | | || || | ||||| | |
Sbjct 235 GGAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCT 176
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289
| || || || || || ||| |||| ||||||| ||
Sbjct 175 TGCCTGTTAGGGTCTTCACACAGATCTGCATCTCTA 140
>seq93939
Length=21031
Score = 82.4 bits (90), Expect = 7e-11
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG--GCAAGTGTTCGTTCGTCA 39132
|||||| || || ||| | |||| || ||||| | || || |||| || | ||
Sbjct 20758 CACCAAGTGCAGGGTGGACCCTTTCTGGCTATTAGAGTCTAAGCGAGTG--CGGCCATCC 20701
Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191
|| ||||||||||| ||||| | ||| |||||| ||| |||||| | || ||| |||||
Sbjct 20700 TCCAGCTGTTTGCCTGCAAAAACCAGATGCTGCTAGTCAGGTGGG-ATGCCCTCCTTGTC 20642
Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251
|||| ||||| || ||| || || || | ||| || |||| | ||| |
Sbjct 20641 TTGGATTAGAGCTTTGACATTCTCCATGGTGTCACTGGGCTCGACCTCCAGGGGGATGGT 20582
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| |||||||| || || ||||||| |||||||
Sbjct 20581 CTTGCCCGTCAGGGTCTTCCCAAAGATCTGCATCT 20547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428705368536500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |