Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq63810 102 7e-17 seq32806 102 7e-17 seq104951 96.9 3e-15 seq18747 86.0 5e-12 seq4243 86.0 5e-12 seq2401 86.0 5e-12 seq93939 82.4 7e-11 >seq63810 Length=35167 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || | |||| || || ||| |||||| || || || || || Sbjct 27683 CATGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 27742 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| | || || ||||||||||| ||||| || | ||||||||||| | Sbjct 27743 GGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGG 27802 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||||||||| ||| || |||| || | | || || || | ||| Sbjct 27803 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 27862 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || || |||| || || || ||||| ||||| Sbjct 27863 CACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || | |||| || || ||| ||| || || || || || || Sbjct 27911 CATGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 27970 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| | || || ||||||||||| ||||| || | ||||||||||| | Sbjct 27971 GGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGG 28030 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||||||||| ||| || |||| || | | || || || | ||| Sbjct 28031 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 28090 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || || |||| || || |||||||| ||||| Sbjct 28091 CACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 28141 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || | |||| || || ||| ||| || || || || || || Sbjct 27455 CATGCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 27514 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| | || || ||||||||||| ||||| || | ||||||||||| | Sbjct 27515 GGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGG 27574 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||||||||| ||| || |||| || | | || || || | ||| Sbjct 27575 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 27634 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || || |||| || || || ||||| ||||| Sbjct 27635 CACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || ||||| | |||| ||| || ||| ||| || || || || || |||| Sbjct 27231 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27290 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||||||||| ||||| || | | ||||||||| | ||| Sbjct 27291 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 27350 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 || ||||||||| ||| || |||| || | | || || || | |||||| Sbjct 27351 CTGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27410 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || ||| || || || ||||| ||||| Sbjct 27411 TCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457 >seq32806 Length=18495 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || ||||| || || | || || || | || || Sbjct 13611 CACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTC 13552 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||| ||||| | ||||||||||||| |||||| | || ||| || || Sbjct 13551 CAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTATCTT 13493 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 | |||| ||||| || | | ||||| || | |||||| || | ||||| | | Sbjct 13492 GGGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCT 13433 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||||| || || |||||||| ||||||| Sbjct 13432 TGCCTGTCAGGGTCTTCACAAAGATGTGCATCT 13400 >seq104951 Length=12537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| | || ||||| || | || || || | || || Sbjct 11033 CACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 11092 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||| |||| || |||||||||||||| |||||| | || ||| ||||| Sbjct 11093 CAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTT 11151 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA-CGTCCACCGTGATACTT 39252 |||||| ||||| | | | || || || | ||| | | | | ||||| | Sbjct 11152 GGATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTC 11211 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || ||||| ||||| ||||||| ||||||| || Sbjct 11212 TTGCCTGTCAGGGTTTTCCCAAAGATCTGCATCTCTA 11248 >seq18747 Length=37247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||||||||| || |||||||||||||||| || | || ||| ||||| | Sbjct 35528 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 35587 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| ||||| | |||| || || | | || || || | ||||| | || Sbjct 35588 ATTTTAGCTTTGA-CTTCGCAGTAGTGTCACGGGGCTTGACCTCGAGTGTGATGGTCTTG 35646 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||||||| || || || ||||| ||||||| Sbjct 35647 CCCGTCAGGGTCTTCAC-AAGATCTGCATCT 35676 >seq4243 Length=11451 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || |||||| | ||||||||||| | || || | | || || Sbjct 6775 CACCAAGTGCAGTATGAACTCTTTCTAGATATTATAATCTGTGAGAGTGCAACCATCCTC 6716 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||| |||| || |||| ||||||||| | || | || || |||||| Sbjct 6715 CAGCTGTTTGCCCACAAAAATCAGACACTGCTGGTCAGACGGGATGCCCTACTTGTCCTG 6656 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| |||| || | || || || || | |||||| | | ||||| | || Sbjct 6655 GATTTTAGCTTTGCCATTCTCAACAGTGTCACTGGGCTCCACCTTTAGTGTGATGGTCTT 6596 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTG 39281 ||||| || || |||||||| || Sbjct 6595 AGTGGTCAGAGTCTTCACAAAGATCTG 6569 >seq2401 Length=18371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| | |||| || |||||||| || | || || || | || || Sbjct 354 CACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 295 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| ||||| || |||||||||||||| |||||| | | ||| |||| Sbjct 294 CAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGG-ATACCCTCCTTGTTTT 236 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| ||||| || | | || || | | | | || || | ||||| | | Sbjct 235 GGAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCT 176 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 | || || || || || ||| |||| ||||||| || Sbjct 175 TGCCTGTTAGGGTCTTCACACAGATCTGCATCTCTA 140 >seq93939 Length=21031 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG--GCAAGTGTTCGTTCGTCA 39132 |||||| || || ||| | |||| || ||||| | || || |||| || | || Sbjct 20758 CACCAAGTGCAGGGTGGACCCTTTCTGGCTATTAGAGTCTAAGCGAGTG--CGGCCATCC 20701 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 || ||||||||||| ||||| | ||| |||||| ||| |||||| | || ||| ||||| Sbjct 20700 TCCAGCTGTTTGCCTGCAAAAACCAGATGCTGCTAGTCAGGTGGG-ATGCCCTCCTTGTC 20642 Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 |||| ||||| || ||| || || || | ||| || |||| | ||| | Sbjct 20641 TTGGATTAGAGCTTTGACATTCTCCATGGTGTCACTGGGCTCGACCTCCAGGGGGATGGT 20582 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || |||||||| || || ||||||| ||||||| Sbjct 20581 CTTGCCCGTCAGGGTCTTCCCAAAGATCTGCATCT 20547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428705368536500