Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 111 1e-19
seq12448 109 4e-19
seq5492 102 5e-17
seq66463 96.9 2e-15
seq104951 93.3 3e-14
seq157463 91.5 1e-13
seq33159 91.5 1e-13
seq159105 86.0 4e-12
seq90327 82.4 5e-11
>seq63810
Length=35167
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| || || || || |||
Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | |||||||| || | || || || ||
Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCTGACCA 27795
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || |||||||||||||| |||||||| | ||||||| | ||| |||||
Sbjct 27794 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27735
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 27734 CATCCAGAAAGAGTCCAC 27717
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| || || || || |||
Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | |||||||| || | || || || ||
Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCTGACCA 27567
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || |||||||||||||| |||||||| | ||||||| | ||| |||||
Sbjct 27566 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27507
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 27506 CATCCAGAAGGAGTCCAC 27489
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || ||| | || || || || ||||| || || || || |||
Sbjct 28142 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 28083
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| | || ||| | || | || | | |||||||| || | || || || |
Sbjct 28082 TGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCTGACC 28024
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||||| || || |||||||||||||| |||||||| | ||||||| | ||| ||||
Sbjct 28023 AGCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACA 27964
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || ||||||||
Sbjct 27963 ACATCCAGAAGGAGTCCAC 27945
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| || || | | ||||| || || || || |||
Sbjct 27457 ATGCAGATCTTCGTGAAGACCTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAGT 27398
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | |||||||| || || || || ||
Sbjct 27397 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCAGCCCCCCTGACCA 27339
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||||||||| |||||||| | ||||||| | ||| |||||
Sbjct 27338 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27279
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 27278 CATCCAGAAGGAGTCCAC 27261
>seq12448
Length=17785
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| |||||||| || || || || ||||| ||||| ||||| ||
Sbjct 3545 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3486
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||| || | |||| ||||| || || || |||||||| | || || ||
Sbjct 3485 TCGGATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTAAT 3426
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || ||||| ||||| ||||||||||| | | ||||| | || ||
Sbjct 3425 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAA 3366
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| ||| | |||||||| | ||| | || || ||
Sbjct 3365 AACATTCAACAGGAGTCCACCCTTCATCTTGTGTTGAG 3328
>seq5492
Length=9153
Score = 102 bits (112), Expect = 5e-17
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664
|| || |||||||||||||| |||||||| || || || || ||||| ||||| |||||
Sbjct 3596 CTCAAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAA 3655
Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724
|| ||| || |||| |||| || || || || ||||| | || ||
Sbjct 3656 CCCTTGGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCT 3715
Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784
||||| || | | || ||||| ||||| |||| |||||| | ||||||| ||
Sbjct 3716 GATCAGCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGAC 3775
Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|||||||| ||||| |||||||| | ||| | || || ||
Sbjct 3776 TACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 3816
>seq66463
Length=18175
Score = 96.9 bits (106), Expect = 2e-15
Identities = 143/201 (71%), Gaps = 5/201 (2%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCAC-GGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||||| |||||||| || ||||| ||| |||||||| || | ||| ||
Sbjct 9627 ATGCAGATTTTCGTGAAAACCCTTACTGGGAAGAACCATCACTCTGGAGGCTGAACCCTT 9686
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || | |||| |||| || || || |||||||| | || || | |||
Sbjct 9687 GGATACAATAGAAAATGTAAAGGCCAAGATCCGGGATAAAGAAGGAATTCCTCCTGCTCA 9746
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | | ||||| ||||| |||||||||| | ||| ||||| | ||||||
Sbjct 9747 GCAAAGGCTGAGCTTTGCTGGCAAGCAACTGGAAGGTGGACGTACTTT----GGTTACAA 9802
Query 23790 CATACAAAAAGAGTCCACATT 23810
||| | ||| |||||||| ||
Sbjct 9803 CATTCCAAAGGAGTCCACTTT 9823
>seq104951
Length=12537
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/198 (71%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT-GACTCCAC 23669
|||||||| || | |||||||| || || || || ||||| ||| ||| | || |||
Sbjct 11243 ATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCAG 11184
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||||| | ||| ||||| ||||| || || | || || || ||
Sbjct 11183 TGACACTATTGAAAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 11124
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || |||| |||||||| ||||| || | |||||| | || || ||
Sbjct 11123 GCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 11064
Query 23790 CATACAAAAAGAGTCCAC 23807
||| | |||||||||||
Sbjct 11063 CATCGAGAAAGAGTCCAC 11046
>seq157463
Length=7943
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||| ||||||| |||| ||| || || || || |||||||| || ||||| ||
Sbjct 563 AAGATGCAGCTTTTCGTGAAAATCCTTACTGGGAAGACCATCACTCTTGAGGTTGAACCC 504
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
||| || | |||| |||| || | || || ||||| | || || | |
Sbjct 503 TCGGGTACAATAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGCT 444
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | || ||||| ||||| || |||||||| | ||| ||||| || |||
Sbjct 443 CAGCAAAGACCGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTAC 384
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| |||||||||||||| | ||| | || || ||
Sbjct 383 AACATTCAAAAAGAGTCCACTCTTCATCTTGTGTTGAG 346
>seq33159
Length=15523
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||| || |||||||| || || || || ||||| ||||| ||||| ||
Sbjct 2321 AAGATGCAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 2262
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || | |||| |||| || || || || |||| | || || |||
Sbjct 2261 TCAGATACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGAT 2202
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
| | | | || ||||| ||||| ||||||||||| | | ||||| | || |||
Sbjct 2201 CTGTAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAC 2142
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| ||||| |||||||| | ||| | || || ||
Sbjct 2141 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 2104
>seq159105
Length=10725
Score = 86.0 bits (94), Expect = 4e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||| || |||||||| || | ||||| ||||| ||||| ||||| ||
Sbjct 5859 AAGATGCAGATTTTTGTGAAAACCCTTACTAGGAAAACAATCACCCTCGAGGTTGAACCC 5800
Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
|||| || | | |||||| || || ||| || || || ||||| | | || |
Sbjct 5799 TCGGATACAATAGAAAATATAAAGAC-AAAGATCCAGGATAAGGAAGGAATTGCTCCTGG 5741
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
| | || | | | ||||| ||||| ||| |||||| | | ||||||| || ||
Sbjct 5740 TTAGCAAAGACTGAGCTTTGCTGGCAAGCAAGTGGAAGCTGGATGCACTTTGTCTGACTA 5681
Query 23787 CAACATACAAAAAGAGTCC 23805
|||||| | ||| ||||||
Sbjct 5680 CAACATTCCAAAGGAGTCC 5662
>seq90327
Length=63722
Score = 82.4 bits (90), Expect = 5e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||| | |||||| || || || || |||||||| || ||||| ||
Sbjct 54482 AAGATGCAGATTTTCATGGAAACCCATACCGGGAAGACCATCACTCTTGAGGTTGAACCC 54541
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || |||| ||||| || || || || ||||| | || || |||
Sbjct 54542 TCAGATACAAGAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 54601
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | | ||||| ||||| ||||||||||| | | | || || || |||
Sbjct 54602 CAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGATGTACCTTGTCTGACTAC 54661
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| |||| ||||||||
Sbjct 54662 AACATTTAAAAGGAGTCCAC 54681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337348421534000
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