Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq63810 111 1e-19 seq12448 109 4e-19 seq5492 102 5e-17 seq66463 96.9 2e-15 seq104951 93.3 3e-14 seq157463 91.5 1e-13 seq33159 91.5 1e-13 seq159105 86.0 4e-12 seq90327 82.4 5e-11 >seq63810 Length=35167 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | |||||||| || | || || || || Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCTGACCA 27795 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || |||||||||||||| |||||||| | ||||||| | ||| ||||| Sbjct 27794 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27735 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 27734 CATCCAGAAAGAGTCCAC 27717 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | |||||||| || | || || || || Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCTGACCA 27567 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || |||||||||||||| |||||||| | ||||||| | ||| ||||| Sbjct 27566 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27507 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 27506 CATCCAGAAGGAGTCCAC 27489 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || || || || ||||| || || || || ||| Sbjct 28142 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 28083 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | |||||||| || | || || || | Sbjct 28082 TGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCTGACC 28024 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| || || |||||||||||||| |||||||| | ||||||| | ||| |||| Sbjct 28023 AGCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACA 27964 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 27963 ACATCCAGAAGGAGTCCAC 27945 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| || || | | ||||| || || || || ||| Sbjct 27457 ATGCAGATCTTCGTGAAGACCTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAGT 27398 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | |||||||| || || || || || Sbjct 27397 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCAGCCCCCCTGACCA 27339 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||||||||| |||||||| | ||||||| | ||| ||||| Sbjct 27338 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAA 27279 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 27278 CATCCAGAAGGAGTCCAC 27261 >seq12448 Length=17785 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || || || ||||| ||||| ||||| || Sbjct 3545 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3486 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| ||||| || || || |||||||| | || || || Sbjct 3485 TCGGATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTAAT 3426 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | | ||||| | || || Sbjct 3425 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAA 3366 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||| | |||||||| | ||| | || || || Sbjct 3365 AACATTCAACAGGAGTCCACCCTTCATCTTGTGTTGAG 3328 >seq5492 Length=9153 Score = 102 bits (112), Expect = 5e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 || || |||||||||||||| |||||||| || || || || ||||| ||||| ||||| Sbjct 3596 CTCAAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAA 3655 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 || ||| || |||| |||| || || || || ||||| | || || Sbjct 3656 CCCTTGGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCT 3715 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 ||||| || | | || ||||| ||||| |||| |||||| | ||||||| || Sbjct 3716 GATCAGCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGAC 3775 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||||| ||||| |||||||| | ||| | || || || Sbjct 3776 TACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 3816 >seq66463 Length=18175 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/201 (71%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCAC-GGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||||| |||||||| || ||||| ||| |||||||| || | ||| || Sbjct 9627 ATGCAGATTTTCGTGAAAACCCTTACTGGGAAGAACCATCACTCTGGAGGCTGAACCCTT 9686 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| |||| || || || |||||||| | || || | ||| Sbjct 9687 GGATACAATAGAAAATGTAAAGGCCAAGATCCGGGATAAAGAAGGAATTCCTCCTGCTCA 9746 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | | ||||| ||||| |||||||||| | ||| ||||| | |||||| Sbjct 9747 GCAAAGGCTGAGCTTTGCTGGCAAGCAACTGGAAGGTGGACGTACTTT----GGTTACAA 9802 Query 23790 CATACAAAAAGAGTCCACATT 23810 ||| | ||| |||||||| || Sbjct 9803 CATTCCAAAGGAGTCCACTTT 9823 >seq104951 Length=12537 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT-GACTCCAC 23669 |||||||| || | |||||||| || || || || ||||| ||| ||| | || ||| Sbjct 11243 ATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCAG 11184 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | ||| ||||| ||||| || || | || || || || Sbjct 11183 TGACACTATTGAAAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 11124 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||| |||||||| ||||| || | |||||| | || || || Sbjct 11123 GCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 11064 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| | ||||||||||| Sbjct 11063 CATCGAGAAAGAGTCCAC 11046 >seq157463 Length=7943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||| ||||||| |||| ||| || || || || |||||||| || ||||| || Sbjct 563 AAGATGCAGCTTTTCGTGAAAATCCTTACTGGGAAGACCATCACTCTTGAGGTTGAACCC 504 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || | || || ||||| | || || | | Sbjct 503 TCGGGTACAATAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGCT 444 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || ||||| ||||| || |||||||| | ||| ||||| || ||| Sbjct 443 CAGCAAAGACCGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTAC 384 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| |||||||||||||| | ||| | || || || Sbjct 383 AACATTCAAAAAGAGTCCACTCTTCATCTTGTGTTGAG 346 >seq33159 Length=15523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| || || || || ||||| ||||| ||||| || Sbjct 2321 AAGATGCAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 2262 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || || |||| | || || ||| Sbjct 2261 TCAGATACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGAT 2202 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | | | | || ||||| ||||| ||||||||||| | | ||||| | || ||| Sbjct 2201 CTGTAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAC 2142 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 2141 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 2104 >seq159105 Length=10725 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| || | ||||| ||||| ||||| ||||| || Sbjct 5859 AAGATGCAGATTTTTGTGAAAACCCTTACTAGGAAAACAATCACCCTCGAGGTTGAACCC 5800 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | | |||||| || || ||| || || || ||||| | | || | Sbjct 5799 TCGGATACAATAGAAAATATAAAGAC-AAAGATCCAGGATAAGGAAGGAATTGCTCCTGG 5741 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 | | || | | | ||||| ||||| ||| |||||| | | ||||||| || || Sbjct 5740 TTAGCAAAGACTGAGCTTTGCTGGCAAGCAAGTGGAAGCTGGATGCACTTTGTCTGACTA 5681 Query 23787 CAACATACAAAAAGAGTCC 23805 |||||| | ||| |||||| Sbjct 5680 CAACATTCCAAAGGAGTCC 5662 >seq90327 Length=63722 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | |||||| || || || || |||||||| || ||||| || Sbjct 54482 AAGATGCAGATTTTCATGGAAACCCATACCGGGAAGACCATCACTCTTGAGGTTGAACCC 54541 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||| ||||| || || || || ||||| | || || ||| Sbjct 54542 TCAGATACAAGAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 54601 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | | ||||| ||||| ||||||||||| | | | || || || ||| Sbjct 54602 CAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGATGTACCTTGTCTGACTAC 54661 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| |||| |||||||| Sbjct 54662 AACATTTAAAAGGAGTCCAC 54681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337348421534000