Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq75256 172 4e-38
seq65576 118 9e-22
seq112790 87.8 1e-12
>seq75256
Length=16458
Score = 172 bits (190), Expect = 4e-38
Identities = 137/165 (83%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||| ||||| || ||||||||||||||||| || |||
Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
||||| || |||||||| |||||||||| || |||||||| || ||||| |||| |
Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| ||||| || | ||||||||||||||| ||||||||||||
Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAGA 6538
>seq65576
Length=5110
Score = 118 bits (130), Expect = 9e-22
Identities = 215/313 (69%), Gaps = 5/313 (2%)
Strand=Plus/Plus
Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCT---CCCGGTTCTAGCCCGGTG 29722
||||| | ||| ||||||| || ||||| | ||| | || || | || | |||
Sbjct 1805 AGGTAAATGTGTGCATCTCTCAAAGTGTGTATAAAGTTATTACCTGGCTTCAGATCCGTG 1864
Query 29723 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGC 29782
| | | || |||||||| ||||| || ||||||||||| ||||| || ||||| | ||
Sbjct 1865 ATGAGTGCAATCATGTAGGTGAGCAGGGAGTAGCTGGCAATGTTGAATGGCACACATAGG 1924
Query 29783 CCCATGTCCCCTGACCTCTGGTAGAGCTG--GCACGAGAGCTCTCCGTCGCTCACGTAAA 29840
|| || || ||||| ||| | || | || || | ||||| || ||| || |
Sbjct 1925 CCTATATCTGCTGACGTCTAGAAGGGTTGCTTTACAACAGCTCATTGTTCTCCACATAGA 1984
Query 29841 ACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGG 29900
||| || | ||||||||| | ||||||| |||||||| | || || || ||||| |
Sbjct 1985 GCTGGCAAAGGGCATGGCATGAAGGAAGGTCCATGAGAGGAAGATCGTTTGGATTCCAAG 2044
Query 29901 CACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCA 29960
|||| |||||| | || | || ||||||||| |||| | ||| | |||||||
Sbjct 2045 TGCACAGGATGATTCTTCTAACGTCAGGGTTGTTCTTGATAATGTCAGTAACCTTTTGCA 2104
Query 29961 GCTGATCCACCCC 29973
| || || || ||
Sbjct 2105 GTTGGTCTACTCC 2117
>seq112790
Length=25949
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 114296 CTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 114355
||||| |||| || | ||||| | | ||||| |||||| || || |||||||||||
Sbjct 23665 CTGAGAACTAAATTAATCCTGTTCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAG 23724
Query 114356 GTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||| |||||||| ||||||| ||||||||||||
Sbjct 23725 GTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 23760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405368706703000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |