Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq75256 172 4e-38 seq65576 118 9e-22 seq112790 87.8 1e-12 >seq75256 Length=16458 Score = 172 bits (190), Expect = 4e-38 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| || ||| Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || |||||||| |||||||||| || |||||||| || ||||| |||| | Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||||||||| |||||||||||| Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAGA 6538 >seq65576 Length=5110 Score = 118 bits (130), Expect = 9e-22 Identities = 215/313 (69%), Gaps = 5/313 (2%) Strand=Plus/Plus Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCT---CCCGGTTCTAGCCCGGTG 29722 ||||| | ||| ||||||| || ||||| | ||| | || || | || | ||| Sbjct 1805 AGGTAAATGTGTGCATCTCTCAAAGTGTGTATAAAGTTATTACCTGGCTTCAGATCCGTG 1864 Query 29723 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGC 29782 | | | || |||||||| ||||| || ||||||||||| ||||| || ||||| | || Sbjct 1865 ATGAGTGCAATCATGTAGGTGAGCAGGGAGTAGCTGGCAATGTTGAATGGCACACATAGG 1924 Query 29783 CCCATGTCCCCTGACCTCTGGTAGAGCTG--GCACGAGAGCTCTCCGTCGCTCACGTAAA 29840 || || || ||||| ||| | || | || || | ||||| || ||| || | Sbjct 1925 CCTATATCTGCTGACGTCTAGAAGGGTTGCTTTACAACAGCTCATTGTTCTCCACATAGA 1984 Query 29841 ACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGG 29900 ||| || | ||||||||| | ||||||| |||||||| | || || || ||||| | Sbjct 1985 GCTGGCAAAGGGCATGGCATGAAGGAAGGTCCATGAGAGGAAGATCGTTTGGATTCCAAG 2044 Query 29901 CACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCA 29960 |||| |||||| | || | || ||||||||| |||| | ||| | ||||||| Sbjct 2045 TGCACAGGATGATTCTTCTAACGTCAGGGTTGTTCTTGATAATGTCAGTAACCTTTTGCA 2104 Query 29961 GCTGATCCACCCC 29973 | || || || || Sbjct 2105 GTTGGTCTACTCC 2117 >seq112790 Length=25949 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114296 CTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 114355 ||||| |||| || | ||||| | | ||||| |||||| || || ||||||||||| Sbjct 23665 CTGAGAACTAAATTAATCCTGTTCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAG 23724 Query 114356 GTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| |||||||| ||||||| |||||||||||| Sbjct 23725 GTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 23760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405368706703000