Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq88024 125 6e-24 seq85480 113 4e-20 seq92079 87.8 2e-12 seq82175 86.0 5e-12 seq46587 86.0 5e-12 >seq88024 Length=2735 Score = 125 bits (138), Expect = 6e-24 Identities = 209/299 (70%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || || |||||||| |||||||| || | ||||| ||||| || ||| || ||||||| Sbjct 2101 CTTGTGAAAACCGACATTCAAATAGCTCTTCCTTCTGGGTGTTATGGAAGAGTAGCTCCA 2042 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 | ||||||||||| |||||||| || || || || || ||||| ||||| ||| Sbjct 2041 CGTTCTGGATTGGCTACAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGACGAAGAT 1982 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATA 31945 || |||||||| | || |||| ||||||||||||| |||||| | | || | Sbjct 1981 TACAGAGGAAATATGGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TC 1925 Query 31946 AAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAA 32005 |||||||| ||| | | || || || ||||| ||| || || ||||||| Sbjct 1924 AAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACGGATTTTTTACCCTGAAATAGAG 1865 Query 32006 GTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGAAA 32064 | || | | | |||||| ||| ||||| || | ||| ||||| || || ||||| Sbjct 1864 GAAGTTCAAGTTTTAGATTACACTAAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAAA 1806 >seq85480 Length=19824 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| |||||||| |||||||| | || ||||| | |||| || || Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || |||||||| |||||||| ||| Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 17672 Query 4692 AC 4693 || Sbjct 17671 AC 17670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || |||||||| || || || |||||||| ||||||||||| ||||| || ||| Sbjct 15900 TCTTTGATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGCA 15841 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 15840 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 15797 >seq92079 Length=13920 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 |||||| | || || || ||||| || || || || ||||||||||||||||| || || Sbjct 5724 ACAAAAACCTT--ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAA 5781 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 | ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || Sbjct 5782 GATGTGAGAGATAAAATACTTCTCCTCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTT 5841 Query 5039 AGTTAAATCAAC 5050 | |||||||| Sbjct 5842 TGACAAATCAAC 5853 >seq82175 Length=13617 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 917 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 858 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 857 ATAAAATCAAAGGGATT 841 >seq46587 Length=1305 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/153 (73%), Gaps = 9/153 (6%) Strand=Plus/Minus Query 31783 TATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGC 31842 |||||| || | | ||||| |||||| | ||| || ||||||| | |||||| | ||| Sbjct 1016 TATTCAGATAGCCCTTCCTTCTGGGTGCCAGGGAAGAGTAGCTCC-ACATCTGGCTAGGC 958 Query 31843 AGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGT 31902 | ||||| | ||||| || || ||||| |||||| ||| || |||||||| | Sbjct 957 TGCAAAACA-----TAGACGTAGGAGCTGGTGTCATAGATGAAGATTACAGAGGAAATAT 903 Query 31903 TGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||| |||| ||||||||||||| |||||| Sbjct 902 TGGTGTTGTACTGTTTAATTTTGGCAAAGAAAA 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426214250946500