Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq88024 125 6e-24
seq85480 113 4e-20
seq92079 87.8 2e-12
seq82175 86.0 5e-12
seq46587 86.0 5e-12
>seq88024
Length=2735
Score = 125 bits (138), Expect = 6e-24
Identities = 209/299 (70%), Gaps = 6/299 (2%)
Strand=Plus/Minus
Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828
|| || |||||||| |||||||| || | ||||| ||||| || ||| || |||||||
Sbjct 2101 CTTGTGAAAACCGACATTCAAATAGCTCTTCCTTCTGGGTGTTATGGAAGAGTAGCTCCA 2042
Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888
| ||||||||||| |||||||| || || || || || ||||| ||||| |||
Sbjct 2041 CGTTCTGGATTGGCTACAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGACGAAGAT 1982
Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATA 31945
|| |||||||| | || |||| ||||||||||||| |||||| | | || |
Sbjct 1981 TACAGAGGAAATATGGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TC 1925
Query 31946 AAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAA 32005
|||||||| ||| | | || || || ||||| ||| || || |||||||
Sbjct 1924 AAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACGGATTTTTTACCCTGAAATAGAG 1865
Query 32006 GTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGAAA 32064
| || | | | |||||| ||| ||||| || | ||| ||||| || || |||||
Sbjct 1864 GAAGTTCAAGTTTTAGATTACACTAAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAAA 1806
>seq85480
Length=19824
Score = 113 bits (124), Expect = 4e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| |||||||| |||||||| | || ||||| | |||| || ||
Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || |||||||| |||||||| |||
Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 17672
Query 4692 AC 4693
||
Sbjct 17671 AC 17670
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| || |||||||| || || || |||||||| ||||||||||| ||||| || |||
Sbjct 15900 TCTTTGATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGCA 15841
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || | |||||||| | ||||||||
Sbjct 15840 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 15797
>seq92079
Length=13920
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/132 (75%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978
|||||| | || || || ||||| || || || || ||||||||||||||||| || ||
Sbjct 5724 ACAAAAACCTT--ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAA 5781
Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038
| ||||| ||||| |||| || || | ||||| || |||||||| || | ||| ||
Sbjct 5782 GATGTGAGAGATAAAATACTTCTCCTCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTT 5841
Query 5039 AGTTAAATCAAC 5050
| ||||||||
Sbjct 5842 TGACAAATCAAC 5853
>seq82175
Length=13617
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 917 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 858
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 857 ATAAAATCAAAGGGATT 841
>seq46587
Length=1305
Score = 86.0 bits (94), Expect = 5e-12
Identities = 112/153 (73%), Gaps = 9/153 (6%)
Strand=Plus/Minus
Query 31783 TATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGC 31842
|||||| || | | ||||| |||||| | ||| || ||||||| | |||||| | |||
Sbjct 1016 TATTCAGATAGCCCTTCCTTCTGGGTGCCAGGGAAGAGTAGCTCC-ACATCTGGCTAGGC 958
Query 31843 AGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGT 31902
| ||||| | ||||| || || ||||| |||||| ||| || |||||||| |
Sbjct 957 TGCAAAACA-----TAGACGTAGGAGCTGGTGTCATAGATGAAGATTACAGAGGAAATAT 903
Query 31903 TGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
||| |||| ||||||||||||| ||||||
Sbjct 902 TGGTGTTGTACTGTTTAATTTTGGCAAAGAAAA 870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426214250946500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |