Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq75256 138 8e-28
seq65576 100 2e-16
>seq75256
Length=16458
Score = 138 bits (152), Expect = 8e-28
Identities = 129/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| ||||| || ||||||||||||||||| || ||
Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
||||| || |||||||| | |||||||| || ||||| || || ||||| || |
Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
||||| ||||| || | ||| ||||||||||| || ||||||||
Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAG 6537
Score = 86.0 bits (94), Expect = 5e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556
|||| ||||| || ||||||||||| || || || || || || || | || || ||||
Sbjct 9830 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 9889
Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616
| |||| ||| ||| |||||| ||||| | ||| |||||||| ||||||||
Sbjct 9890 CTCTGTTGGAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATTC 9949
Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
| || ||||| || || ||||| | |||||||| ||
Sbjct 9950 TCACTCCCTTGGATGACAGTTCTTTAGCATTTGTGGATCC 9989
>seq65576
Length=5110
Score = 100 bits (110), Expect = 2e-16
Identities = 231/344 (67%), Gaps = 7/344 (2%)
Strand=Plus/Plus
Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189
|||||| | ||||| || || | || |||||| | ||| || |||| || |||||
Sbjct 1775 AGCTGAATTTTCAGTGGCTCAGTGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGT 1834
Query 27190 ACAAACTCT---CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 27246
| ||| | || || | || | |||| | | || |||||||| ||||| || |||
Sbjct 1835 ATAAAGTTATTACCTGGCTTCAGATCCGTGATGAGTGCAATCATGTAGGTGAGCAGGGAG 1894
Query 27247 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG- 27305
|||||||| ||||| || || || | || || || || | ||| ||| | || | ||
Sbjct 1895 TAGCTGGCAATGTTGAATGGCACACATAGGCCTATATCTGCTGACGTCTAGAAGGGTTGC 1954
Query 27306 -ACACGAGAGCTC-TCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGA 27363
|| | ||||| | || | || || | ||| || | ||| ||||| | ||||||
Sbjct 1955 TTTACAACAGCTCATTGTTCTC-CACATAGAGCTGGCAAAGGGCATGGCATGAAGGAAGG 2013
Query 27364 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 27423
||||||| | || || || ||||| | ||||| |||||| | || | || |||
Sbjct 2014 TCCATGAGAGGAAGATCGTTTGGATTCCAAGTGCACAGGATGATTCTTCTAACGTCAGGG 2073
Query 27424 TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467
|||||| |||| | ||| | |||||||| || || || ||
Sbjct 2074 TTGTTCTTGATAATGTCAGTAACCTTTTGCAGTTGGTCTACTCC 2117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 368784409275500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |