Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq75256 138 8e-28 seq65576 100 2e-16 >seq75256 Length=16458 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| || || Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || |||||||| | |||||||| || ||||| || || ||||| || | Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||||||||| || |||||||| Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAG 6537 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| ||||| || ||||||||||| || || || || || || || | || || |||| Sbjct 9830 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 9889 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | |||| ||| ||| |||||| ||||| | ||| |||||||| |||||||| Sbjct 9890 CTCTGTTGGAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATTC 9949 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 | || ||||| || || ||||| | |||||||| || Sbjct 9950 TCACTCCCTTGGATGACAGTTCTTTAGCATTTGTGGATCC 9989 >seq65576 Length=5110 Score = 100 bits (110), Expect = 2e-16 Identities = 231/344 (67%), Gaps = 7/344 (2%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 |||||| | ||||| || || | || |||||| | ||| || |||| || ||||| Sbjct 1775 AGCTGAATTTTCAGTGGCTCAGTGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGT 1834 Query 27190 ACAAACTCT---CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 27246 | ||| | || || | || | |||| | | || |||||||| ||||| || ||| Sbjct 1835 ATAAAGTTATTACCTGGCTTCAGATCCGTGATGAGTGCAATCATGTAGGTGAGCAGGGAG 1894 Query 27247 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG- 27305 |||||||| ||||| || || || | || || || || | ||| ||| | || | || Sbjct 1895 TAGCTGGCAATGTTGAATGGCACACATAGGCCTATATCTGCTGACGTCTAGAAGGGTTGC 1954 Query 27306 -ACACGAGAGCTC-TCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGA 27363 || | ||||| | || | || || | ||| || | ||| ||||| | |||||| Sbjct 1955 TTTACAACAGCTCATTGTTCTC-CACATAGAGCTGGCAAAGGGCATGGCATGAAGGAAGG 2013 Query 27364 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 27423 ||||||| | || || || ||||| | ||||| |||||| | || | || ||| Sbjct 2014 TCCATGAGAGGAAGATCGTTTGGATTCCAAGTGCACAGGATGATTCTTCTAACGTCAGGG 2073 Query 27424 TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467 |||||| |||| | ||| | |||||||| || || || || Sbjct 2074 TTGTTCTTGATAATGTCAGTAACCTTTTGCAGTTGGTCTACTCC 2117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368784409275500