Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq95845 132 7e-26
seq85480 125 1e-23
seq88024 123 3e-23
seq124007 105 9e-18
seq46587 89.7 7e-13
>seq95845
Length=12527
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | ||
Sbjct 947 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 888
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||||| || |||||||| |||||||| ||||| || || | | |||||||
Sbjct 887 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 828
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 827 TTTCTTATACCAT 815
>seq85480
Length=19824
Score = 125 bits (138), Expect = 1e-23
Identities = 99/119 (83%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | |||||| ||||| ||||| || ||||| ||||| ||||| |||
Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||||| || ||||| ||||||||||| || |||||||| || ||||| ||
Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGC 17673
>seq88024
Length=2735
Score = 123 bits (136), Expect = 3e-23
Identities = 238/344 (69%), Gaps = 19/344 (6%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | | |||| ||| ||||| | ||| ||||||
Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTTAGTGTAATCTAAAACTTGAACTTCC 1865
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | ||||| ||| | || |||| | | || || || || |||| ||||||| | ||
Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | ||| | || || || | ||||| ||||||
Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985
Query 46054 TCATCTATTACTCCCCCTCCCACATCGATACC---TTTTAGAGACAGTCCAGATCTAGGA 46110
|| ||||| || || |||| ||||| || |||| || || |||||| | |||
Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045
Query 46111 GCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166
|||| |||||||||| ||||| || | || || |||| || ||||| | |||
Sbjct 2046 GCTACTCTTCCATAACACCCAGAA----GGAAGAGCTATTTGAATGTCGGTTTTCA-CAA 2100
Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208
||||||| ||| || || || || || || ||||||||
Sbjct 2101 -GGATTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTA 2143
>seq124007
Length=20016
Score = 105 bits (116), Expect = 9e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| || || |||||||| | |||||||| || |||
Sbjct 7188 GTACCAGCATTGAAGAGAGTGGGAGAGGCGTGGGTAAACCACCTCTCAGAAAGAAGGTTG 7129
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|||||||||||||| | || || || || |||||| || || | ||| | |||||||
Sbjct 7128 TATGTTTCAATAGCAGCATCAATATCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 7069
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
||||| || ||||||||| ||
Sbjct 7068 ATATGTTGTGGTCTTTCAGCC 7048
Score = 93.3 bits (102), Expect = 6e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | ||
Sbjct 14156 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 14097
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| |||||||| | || || ||||||| ||
Sbjct 14096 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 14037
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| | || || || | ||||||||||
Sbjct 14036 TCCAAGTAAATAGCAAATGCTCCAGGTCG 14008
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974
||||||| |||||||| ||||||||||| ||||||| ||||| || |||||||| ||
Sbjct 14618 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 14559
Query 77975 CATCAATGACCAGT 77988
|||||| |||||||
Sbjct 14558 CATCAAAGACCAGT 14545
>seq46587
Length=1305
Score = 89.7 bits (98), Expect = 7e-13
Identities = 172/248 (69%), Gaps = 8/248 (3%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| || || | | ||| | | |||||||| |||||| | ||| ||||||
Sbjct 744 TCCAGTGGAACCGAAACTTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 801
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| || |||||| | || | || | | || || || || |||| |||| | ||
Sbjct 802 TCTGTTTCTGGATAAAA-ATCCATTCACAAATGAGCTGTGCAATTCAGTCACTCTCTTTG 860
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | ||| | || ||||| | ||||| ||||||
Sbjct 861 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAATATTTCCTCTGTAATCT 920
Query 46054 TCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGCT 46113
|||||||| || || |||| || || || |||| || | |||||| | ||||||
Sbjct 921 TCATCTATGACACCAGCTCCTACGTC--TATGTTTTGCAGCCTAGCCAGATGT-GGAGCT 977
Query 46114 ATTCTTCC 46121
| ||||||
Sbjct 978 ACTCTTCC 985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693275120720000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |