Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq95845 132 7e-26 seq85480 125 1e-23 seq88024 123 3e-23 seq124007 105 9e-18 seq46587 89.7 7e-13 >seq95845 Length=12527 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | || Sbjct 947 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 888 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| || |||||||| |||||||| ||||| || || | | ||||||| Sbjct 887 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 828 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 827 TTTCTTATACCAT 815 >seq85480 Length=19824 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | |||||| ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| || |||||||| || ||||| || Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGC 17673 >seq88024 Length=2735 Score = 123 bits (136), Expect = 3e-23 Identities = 238/344 (69%), Gaps = 19/344 (6%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||| ||| ||||| | ||| |||||| Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTTAGTGTAATCTAAAACTTGAACTTCC 1865 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | ||||| ||| | || |||| | | || || || || |||| ||||||| | || Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || || || | ||||| |||||| Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985 Query 46054 TCATCTATTACTCCCCCTCCCACATCGATACC---TTTTAGAGACAGTCCAGATCTAGGA 46110 || ||||| || || |||| ||||| || |||| || || |||||| | ||| Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045 Query 46111 GCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 |||| |||||||||| ||||| || | || || |||| || ||||| | ||| Sbjct 2046 GCTACTCTTCCATAACACCCAGAA----GGAAGAGCTATTTGAATGTCGGTTTTCA-CAA 2100 Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208 ||||||| ||| || || || || || || |||||||| Sbjct 2101 -GGATTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTA 2143 >seq124007 Length=20016 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| || || |||||||| | |||||||| || ||| Sbjct 7188 GTACCAGCATTGAAGAGAGTGGGAGAGGCGTGGGTAAACCACCTCTCAGAAAGAAGGTTG 7129 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || |||||| || || | ||| | ||||||| Sbjct 7128 TATGTTTCAATAGCAGCATCAATATCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 7069 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 7068 ATATGTTGTGGTCTTTCAGCC 7048 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 14156 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 14097 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | || || ||||||| || Sbjct 14096 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 14037 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || | || || || | |||||||||| Sbjct 14036 TCCAAGTAAATAGCAAATGCTCCAGGTCG 14008 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| ||||||||||| ||||||| ||||| || |||||||| || Sbjct 14618 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 14559 Query 77975 CATCAATGACCAGT 77988 |||||| ||||||| Sbjct 14558 CATCAAAGACCAGT 14545 >seq46587 Length=1305 Score = 89.7 bits (98), Expect = 7e-13 Identities = 172/248 (69%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| || || | | ||| | | |||||||| |||||| | ||| |||||| Sbjct 744 TCCAGTGGAACCGAAACTTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 801 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | || |||||| | || | || | | || || || || |||| |||| | || Sbjct 802 TCTGTTTCTGGATAAAA-ATCCATTCACAAATGAGCTGTGCAATTCAGTCACTCTCTTTG 860 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || ||||| | ||||| |||||| Sbjct 861 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAATATTTCCTCTGTAATCT 920 Query 46054 TCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGCT 46113 |||||||| || || |||| || || || |||| || | |||||| | |||||| Sbjct 921 TCATCTATGACACCAGCTCCTACGTC--TATGTTTTGCAGCCTAGCCAGATGT-GGAGCT 977 Query 46114 ATTCTTCC 46121 | |||||| Sbjct 978 ACTCTTCC 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693275120720000